RNA id: XM_026914403.2


Basic Information

Item Value
RNA id XM_026914403.2
length 2330
RNA type mRNA
GC content 0.49
exon number 6
gene id rspo3
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2313109 ~ 2326539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGCTGAAGTCATCAGTTATCGCATGGAGAGTGTGTTGCGCcgtggcagagagagagagagagagagagagagagagagagttgctCAACTGTGAAACTTTGAGCTGTCTAGGCTGCGTcagtaatgtatgtatataaaaaggCGAGCTGAAGTTGATATTTCAAGCCGAATTTGTGTGAAAGTTGTAGTTAAACTCGTGTGAGATGCCGCTGAGACGCGGACCTCCTCCTCCGTACCGAATCCGATAAAGTTACGCGCACACACCTGGACACCCCGCGCTCCTTCCACCCGGGAATACAGAAGACAGGGACGGTGGATAAGCCACACTTCCAGCCTTTCTTCATGTCAGCTTTGGCTCGTGGTGCGACCAAGAACTAACAGTTGGCTTTTGCTATGAAATCTGTGCGACGGACGGAAGACTAACGATCTGTACGCTCCGATGAAATGTGCTACACCGTGTGGATACCGAGCTGTCGCGCGCTCTTTTAGCGGCTTCTGGGAGGATTTCTTACAGGATGGTGGTGCCGAATTGGCCCAGGTGTTTTTGGGCCATTGTAAATTCCCCTGAGCAGAGTTGCGGCTTCTGCCCGCTGTAGAAAGCGTGCGTTGCAGTACACGTTTGGCGCAACGCGTCTGTCGAGGACATTAACATTGGCAAGACAAGCATCGCTCCTCCGGTTACTATGCAATTGCAACTAATCTCCATTGTATTGATCTTGCACTGGATGGAGTACGCAAACTGTCAGCATCATACCTCCAGGCACCGGCAGCACGAGCGAGGTCCGGGATGCATGGGAGGCTGTCTGACCTGCTCGGCTTCGAATGGGTGCCTGACATGCATGCCCAGGCTCTTCATTCACCTGGAGAGGGATGGCATGAGGCAGATAGGCGTGTGTCTGGCTTCCTGTCCCAAGGGTTTCTTTGGCACTCGCTCACCTGAAAAAAATGACTGCTCCAAATGTGGCTCTGAGTGCGACACCTGCTTTGACAAGAATTTCTGCACACGTTGCAGAGCAGGATCGTATCTTCACAAAGGGAAATGCCAAGAGAGCTGCCCAGATAATCTAGTGCCCAGTGACATCAAGAGGGAGTGTGTTGCACCATGCCCAGTGAACTGTGAGTCCTGCCTGAACAGTGACACCTGTACAAGGTGTATGTCAGGTCATTATCTACTGCATGGTCAGTGTCACAGCATCTGCCCTGAGGAGTTTGAGCCCAGCGAGCAGTCAATGGAGTGTATTCCTAAAGTGCACTGTGAGGTGGGAGAGTGGAGTGAGTGGGGCCTGTGCTCGCGGATAGGGAAAACCTGCTTTGGAGAAGAAAGCCGCACACGGAAAGTTCTGCAGAACCCCAGTCCTCAGGGCAACCCTTGCCCTTCCACCTTAGAGAAGAGAGAATGCCTTGTTAAGAAAAAGAGATGTGGGAAGGGAGACAAAGGCTCACAtaaaggagagaggaagaatCGCAACAATCGAAAGGAGAAGACAAACAGTGAGAGCCGTCGAGAGCggaagagagagcgagagcgggAGAGAGAGCTGGGCACCAGGGACGATGACAACAGGAACAAAACAGAACAGCGTCACAAAAGGACCCAGAGCAGAGGCACTATAATGGAATAGGGAGAATCTGCACGGTGATCCTCTCAATTAACCCTCCGCTGGTTCTCCCACCCCTCTGCCCCTTAACCTCCCCACTTTCAGGGGTGCTGCTGCTACCTgtataatttaaatgtatactgtatatgcacaaGAGAAACAAAGCACTGATCAGACAAGTGACATGAACAGTGAAGCTCACCCTTCTCCCTTCTGGCTCAACGCTCTCAAAGGGCATCTATTGCTCATGTGACATCTTTCTCATGCAGAGGAGTTGGAACGATGTTGAACTCACTGTAGTGGAGTGGGACCTTTATGAAACAGCAGACTGATGATGTTGACTCAGACACTGCCCTGGTACAGCATCGCTTTGTGGTTTGAATGTAGAGTTCTTCAACATTATGTAGAGTTGCTATTGTATAAACGtctatcttttattttttttggctgagTAAATTAAAAGCTTGTGTCATGGACATTGCCTATTGAGAAATCTATGACTGCAGGATGGACTGGTATAAACCCACCAGACAAGAGGACAGGCTGTGGTTTTACTGGATAAAGAGGTAATGGTTCTccctgcaattttttttttattaatctttgTTCAGTGTCCTCCAAATAAAGGGGGAAGTTTGCCTGTCTGTAGTAGCAGAATCCAAGCTTTCAATTAAGCCATCTGACCGGAAACCAAAAGCACCTGTatgttcaataaataaagatgtttgta

Function

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0008201 heparin binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K23098 RSPO3; R-spondin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1533 lncRNA downstream 48535 2264375 ~ 2264574 (-) True G1238
TU1531 lncRNA downstream 60717 2250950 ~ 2252392 (-) True G1236
TU1532 lncRNA downstream 62701 2249765 ~ 2250408 (-) True G1237
TU1506 lncRNA downstream 147728 2163324 ~ 2165381 (-) True G1216
XR_003402788.2 lncRNA downstream 183682 2112356 ~ 2129427 (-) True LOC113526561
TU1609 lncRNA upstream 51289 2377828 ~ 2378028 (-) True G1303
TU1605 lncRNA upstream 62164 2388703 ~ 2400232 (-) False cenpw
TU1745 lncRNA upstream 222239 2548778 ~ 2553558 (-) True G1422
TU1749 lncRNA upstream 263946 2590485 ~ 2639703 (-) False G1425
TU1744 lncRNA upstream 286718 2613257 ~ 2656299 (-) True G1421
XM_026913416.2 mRNA downstream 14043 2294849 ~ 2299066 (-) True cnih4
XM_026914229.2 mRNA downstream 50778 2253256 ~ 2262331 (-) False preb
XM_026914228.2 mRNA downstream 50860 2253256 ~ 2262249 (-) True preb
XM_026914304.2 mRNA downstream 157931 2151756 ~ 2155178 (-) True LOC113526881
XM_026913723.2 mRNA downstream 165129 2136806 ~ 2147980 (-) True rragca
XM_026914141.2 mRNA upstream 62109 2388648 ~ 2400257 (-) True cenpw
XM_026913455.2 mRNA upstream 98212 2424751 ~ 2438715 (-) True trmt11
XM_026913451.2 mRNA upstream 119190 2445729 ~ 2451519 (-) True hint3
XM_026913989.2 mRNA upstream 407972 2734511 ~ 2775211 (-) True osbpl10b
XM_034310776.1 mRNA upstream 407972 2734511 ~ 2775210 (-) False osbpl10b
XR_004578099.1 other downstream 1635309 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 1713943 598781 ~ 599166 (-) True G502
TU238 other downstream 2147040 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 2151043 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 2174265 137374 ~ 138844 (-) False spag1b
XR_004578455.1 other upstream 114307 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 591789 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 917296 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 1331641 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 1347707 3674246 ~ 3675836 (-) True G2020

Expression Profile