G86716


Basic Information

Item Value
gene id G86716
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21614988 ~ 21615996 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU102939
cagagacatagcagaaactttaggaggaccaaatcaacaatttggtacattcttaaaagaaggaatgcactggcaagctcagcaacaccaaaaggcctgggagaccacagaaaacaactaaagtggatgattgcagaattcttttcttattgaagaacaaccccttcacaacatctagccaagtcaggaacactctggaggaggtaggcttatcattgtcaaagtctacaatcaagagccaccttcatgaatgtaaatacagacggtttacctcaagatgcaaaccgctggtaacactcaagaacacaaagaccagattagactttgctaaaaaacctctaaaaaaagcctgaccagttctgatgcaagattaacttgtaccagaatgatgggaagagaaaagtatggagaaggaaaggaagggctcatgatccaaagcataccacatcatctgtcaaacatgtggaggaagtgttatggcatgggcatgtttggctgccaattgaactgggtcactggggtttattgataatgtggctgttgatagaagtagcaggatgaattctgaagtgtacagagctatactttctgctcagattcagtcaaatgctgcaaaactgataggacagcgcttcacagtacagatggataacaacccaaaacatactgtgaaagcagcccaagagcttggaaattaaatgttcttaaatggccgagtcagtcacctgacctcaacccaactgagctgcttttcacttactgaagacaaatctgaaggcagaatgacccacaaacaagcagcaactgaagatggctgcagtaaagagctggcaaatcatctcaagggaggaaactcagcatttggtgatgtccatggggtccagacttcaggtagtcattgactgcaaaggatttatctccaagtaataaaaataatcctaatatttatgattatattagtttgtcccattacttttgagcctgtgaaaatggaggaactctgtaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102939 True 1009 lncRNA 0.41 1 21614988 21615996

Neighbor

gene id symbol gene type direction distance location
plcd4b LOC108266487 coding downstream 7756 21595192 ~ 21607232 (-)
LOC113525793 bcs1l,LOC108266488,LOC108423941,LOC107673730,LOC107741911,LOC107714219,LOC107555925 coding downstream 30216 21579658 ~ 21584772 (-)
LOC113526132 LOC108266490,LOC108266489,LOC108261972 coding downstream 36662 21573308 ~ 21578326 (-)
LOC117597323 LOC107555925,LOC107741911,LOC107673730,LOC107714219,LOC107596087,LOC108266488 coding downstream 51302 21562277 ~ 21563686 (-)
LOC113526133 LOC108266489,LOC108266490,LOC108261972 coding downstream 58116 21549749 ~ 21556872 (-)
ybey ybey,LOC107670327,LOC107720944 coding upstream 9223 21625219 ~ 21627854 (-)
vil1 vil1,LOC107699006,LOC107676071,LOC107601613,LOC107755365 coding upstream 20488 21636484 ~ 21656555 (-)
itgb2 LOC100304487 coding upstream 40977 21656973 ~ 21668200 (-)
agr1 LOC108266080 coding upstream 322979 21938975 ~ 21943773 (-)
hdac4 hdac4,LOC107560613,LOC107601379,LOC107741589 coding upstream 418652 22034648 ~ 22205434 (-)
G86713 NA non-coding downstream 4853 21609858 ~ 21610135 (-)
G86621 NA non-coding downstream 170904 21442896 ~ 21444084 (-)
G86350 NA non-coding downstream 587156 21027526 ~ 21027832 (-)
LOC113547596 NA non-coding downstream 638833 20965900 ~ 20976155 (-)
G86260 NA non-coding downstream 814438 20800289 ~ 20800550 (-)
G86719 NA non-coding upstream 5654 21621650 ~ 21621874 (-)
G86723 NA non-coding upstream 18152 21634148 ~ 21634354 (-)
G86754 NA non-coding upstream 178427 21794423 ~ 21796407 (-)
G86850 NA non-coding upstream 366200 21982196 ~ 21982404 (-)
G86947 NA non-coding upstream 472052 22088048 ~ 22095097 (-)
G86715 NA other downstream 477 21613636 ~ 21614511 (-)
LOC113526134 LOC108266489,LOC108266490,LOC108261972,LOC108266491 other downstream 95029 21506436 ~ 21519959 (-)
G86592 NA other downstream 145807 21465166 ~ 21469181 (-)
LOC117597354 NA other downstream 155584 21457733 ~ 21459404 (-)
dhrs9 LOC108423955,LOC108423956 other downstream 309689 21299872 ~ 21305299 (-)
LOC113525948 lct,LOC107739717,LOC107688954,LOC107704822,LOC107601360 other upstream 628476 22244472 ~ 22255729 (-)
G87069 NA other upstream 774440 22390436 ~ 22397343 (-)
LOC113547179 NA other upstream 1526647 23142643 ~ 23149188 (-)
LOC113524760 fam126b,LOC106586955,LOC105905895,LOC104961134 other upstream 1984122 23600118 ~ 23672300 (-)
nr4a2a nr4a2,nr4a2a,LOC106586168,LOC107567064,LOC107657406,LOC107572156,LOC107745273,LOC107734489 other upstream 2196616 23812612 ~ 23819794 (-)

Expression


Co-expression Network