RNA id: TU102939


Basic Information

Item Value
RNA id TU102939
length 1009
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G86716
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21614988 ~ 21615996 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagagacatagcagaaactttaggaggaccaaatcaacaatttggtacattcttaaaagaaggaatgcactggcaagctcagcaacaccaaaaggcctgggagaccacagaaaacaactaaagtggatgattgcagaattcttttcttattgaagaacaaccccttcacaacatctagccaagtcaggaacactctggaggaggtaggcttatcattgtcaaagtctacaatcaagagccaccttcatgaatgtaaatacagacggtttacctcaagatgcaaaccgctggtaacactcaagaacacaaagaccagattagactttgctaaaaaacctctaaaaaaagcctgaccagttctgatgcaagattaacttgtaccagaatgatgggaagagaaaagtatggagaaggaaaggaagggctcatgatccaaagcataccacatcatctgtcaaacatgtggaggaagtgttatggcatgggcatgtttggctgccaattgaactgggtcactggggtttattgataatgtggctgttgatagaagtagcaggatgaattctgaagtgtacagagctatactttctgctcagattcagtcaaatgctgcaaaactgataggacagcgcttcacagtacagatggataacaacccaaaacatactgtgaaagcagcccaagagcttggaaattaaatgttcttaaatggccgagtcagtcacctgacctcaacccaactgagctgcttttcacttactgaagacaaatctgaaggcagaatgacccacaaacaagcagcaactgaagatggctgcagtaaagagctggcaaatcatctcaagggaggaaactcagcatttggtgatgtccatggggtccagacttcaggtagtcattgactgcaaaggatttatctccaagtaataaaaataatcctaatatttatgattatattagtttgtcccattacttttgagcctgtgaaaatggaggaactctgtaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102933 lncRNA downstream 4853 21609858 ~ 21610135 (-) True G86713
XR_004578188.1 lncRNA downstream 155584 21457733 ~ 21459404 (-) True LOC117597354
TU102902 lncRNA downstream 155658 21457735 ~ 21459330 (-) False LOC117597354
TU102905 lncRNA downstream 155658 21457735 ~ 21459330 (-) False LOC117597354
XR_004578189.1 lncRNA downstream 155906 21457733 ~ 21459082 (-) False LOC117597354
TU102942 lncRNA upstream 5654 21621650 ~ 21621874 (-) True G86719
TU102949 lncRNA upstream 18152 21634148 ~ 21634354 (-) True G86723
TU102985 lncRNA upstream 178427 21794423 ~ 21796407 (-) True G86754
TU103086 lncRNA upstream 366200 21982196 ~ 21982404 (-) True G86850
TU103193 lncRNA upstream 472052 22088048 ~ 22095097 (-) True G86947
XM_034304551.1 mRNA downstream 7756 21595192 ~ 21607232 (-) False plcd4b
XM_034304550.1 mRNA downstream 7798 21595192 ~ 21607190 (-) True plcd4b
XM_034304552.1 mRNA downstream 10096 21595192 ~ 21604892 (-) False plcd4b
XM_026912384.2 mRNA downstream 30216 21579658 ~ 21584772 (-) True LOC113525793
XM_034304247.1 mRNA downstream 36662 21573308 ~ 21578326 (-) True LOC113526132
XM_026912454.2 mRNA upstream 9223 21625219 ~ 21627854 (-) True ybey
XM_026912455.2 mRNA upstream 9223 21625219 ~ 21627657 (-) False ybey
XM_026912453.2 mRNA upstream 9223 21625219 ~ 21627657 (-) False ybey
XM_026912517.2 mRNA upstream 20488 21636484 ~ 21656555 (-) False vil1
XM_026912519.2 mRNA upstream 20488 21636484 ~ 21655155 (-) True vil1
TU102935 other downstream 477 21613636 ~ 21614511 (-) True G86715
XR_003402729.2 other downstream 95029 21506436 ~ 21519959 (-) True LOC113526134
TU102794 other downstream 145807 21465166 ~ 21469181 (-) True G86592
TU102903 other downstream 155658 21457735 ~ 21459330 (-) False LOC117597354
TU102904 other downstream 155658 21457735 ~ 21459330 (-) False LOC117597354
XR_003402720.2 other upstream 629146 22245142 ~ 22255729 (-) False LOC113525948
TU103335 other upstream 774440 22390436 ~ 22397343 (-) True G87069
trnae-cuc_14 other upstream 1081051 22697047 ~ 22697118 (-) True trnae-cuc_14
XR_004578275.1 other upstream 1526647 23142643 ~ 23149188 (-) False LOC113547179
XR_004578274.1 other upstream 1526647 23142643 ~ 23148839 (-) False LOC113547179

Expression Profile