G78058 (LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890)


Basic Information

Item Value
gene id G78058
gene name LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6529046 ~ 6615660 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU92638
AGAGTTTGAAGCTTTGAGCAGAGGGACTGAGTGAAAACATGGAccgaaaaaaaaagaaaacatggagTTACAGTTGTTATAaagattgtttacatttgtaatttaaaCACACCCCGAAAAGGGCACACGcacCTGTAACTCTGGACCCCAACACTGTTCATCCTGAACTCATTGTATCTGATGATCTGACCAGTGTGAGATTCAGTGATGAGAAACAGAAACTTCCTGATAATCCAGAGAGATTTGATGAATATTGGTGTATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACACACTGGATTGTAGGTGTGATGACAGAGTCTGCTAAGAGGAAGGGAGAGATATTCTCCAGAAGTGGAATCTGGTGTGTGGTGAATTATTGTGGTAAATATAGAGCACATTCTACACCACAGCCAGAGACTCTCCTCTCAGTAGCACAGAAACTCCAGAGGATCAGAGTGCAGCTGGACTgggacagaggaaagctgtcaTTCTCCGAccctctcactaacacacacatacacactttcacacacacatttactgacAAATTACTGCCATTCCTATGTGTTTATGGTAAAGAATCTCCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCTGATATTATTTATTCCAGTTCATTAATGAAATATTGcagattaaaacatttatattctttgtgaaagtttgtttttacagaatcactgaacagttcattgtgaaatgttttttgaaGACCTATGACGTTATTTCGACTCGTCAGTTAAATCAATATAATGTGAAAACTGGAAATATTGATAGAATATCTTATTCTGAGtcctaaaaaatataatatcttaAAATACTGACACATCTTGAAATTCCTATTTATTAAATGACTAACTCCATCTTTTTCGCACAACTTTCAGTTCAGGGCttccacaaacaaacaaaccgcaggatgaaattaaaataataaacttgtatttaaatgtagaatttgaaatctgaaatagatttaattttattgatgtattttaaatcactttaaataaaCTGAGAC
>TU92645
CACTGCTGGGATGTTGAAGTTGGAGACTGTACAGGCTGGGAAGTCGGTGTGATGACAGAATCTGCTCAGAGGAAGGGAAATGTATTCTCAAGAAGTGGAATCTGGTATGTGTGGTATTTTTGTGGTAAATATGGAGCACGTTCTACACCACAGACTTTCACTCTCCTCTCAGTAGCACAGAAACTCCAGAGGATCAGAGTGCAGCTGGACTgggacagaggaaagctgtcaTTCTCCGAccctctcactaacacacacatacacactttcacacacacatttactgacAAATTAATGCCATTCCTAAGTGTTATTGGTAAAGAATCTCCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCtgatattgttttattccaGTTCATTAATGAAATATTGCAGATTAAAAGATTTATATTCTTTGTGAAAGTTTGTTTTTACAGAAGCACTGAACAGTttattgtgaaatgttttttgaaGAGATATGACGTTATTTCGACTCGTCAGTTAAATCAATTTAATGTGAAAACTGGAAATATTGATAGAATATCTTATTCTGAgtactaaaaaatataatatctcaAAATACTGATACATCTTGAAATTCCTGTTTATTAAATGACTAACTCCATCTTTTTCCCACAACTTTCAGTTCAGGGCttccacaaacaaacaaaccacaggatgaaattaaaatcataaacgtg
>TU92652
CAGACGGACTGAGTGAAAACATGGAGCGATGCAGCAGCTTACAAAAGTTTTAGAGTTACAATTGTTATAAAGattgtttacatttgtaatttaaaCACACCCCGAAAAGGGCACACGcacCTGTAACTCTGGACCCCAACACTGTTCATCCTGAACTCATTGTATCTGATGATCTGACCAGTGTGAGATTCAGTGATGAGAAACAGAAACTTCCTGATAATCCAGAGAGATTTGATGAATATTGGTGTATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACACACTGGATTGTGGGTGTGATGACAGAATCTGCTCAGAGGAAGGGGAATGTATTCTCCAGAAGTGGAATCTGGCATGTGTGGTATTATAAGGATAAATATGGAGCACGTTCTACACCACAGCCAGAGACTCTCCTCTCAGTAGCACAGAAACTCCAGACGATCAGAGTGCAGCTGGACTgggacagaggaaagctgtcaTTCTCCGAccctctcactaacacacacatacacactttcacacacacatttactgacGAATTACTGCCATTCCTATATGTTTATGGTGAAGAATCTCCTCTAAAGATCCTCCCACTACAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCtgatattgttttattccaGTTCATTAATGAAATATTGCAGATTAAAAGATTTATATTCTTTGTGAAAGTTTGTTTTTACAGAAGCACTGAACAGTttattgtgaaatgttttttgaaGAGATATGACGTTATTTCGACTCGTCAGTTAAATCAATTTAATGTGAAAACTGGAAATATTGATAGAATATCTTATTCTGAgtactaaaaaatataatatctcaAAATACTGATACATCTTGAAATTCCTGTTTATTAAATGACTAACTCCATCTTTTTCCCACAACTTTCAGTTCAGGGCttccacaaacaaacaaaccacaggatgaaattaaaatcataaacgtg

Function

NR:

description
PREDICTED: zinc-binding protein A33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92638 True 1100 lncRNA 0.37 3 6593141 6615660
TU92645 False 729 TUCP 0.37 2 6529046 6564571
TU92652 False 1010 TUCP 0.39 3 6529046 6565037

Neighbor

gene id symbol gene type direction distance location
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding downstream 22256 6503829 ~ 6506790 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding downstream 43471 6482345 ~ 6485575 (-)
mcf2lb LOC108266232,LOC108430488 coding downstream 97922 6408161 ~ 6431124 (-)
LOC113534858 LOC108266244 coding downstream 285334 6225854 ~ 6243712 (-)
LOC117597339 NA coding downstream 297854 6228208 ~ 6231192 (-)
LOC117597448 epb41l5,LOC107566159 coding upstream 13311 6628971 ~ 6677161 (-)
LOC117597447 rnf17 coding upstream 92591 6708251 ~ 6715332 (-)
uggt2 uggt2,LOC108266228,LOC108430493,LOC107600415,LOC107663813,LOC107655477 coding upstream 113281 6728941 ~ 6769727 (-)
LOC113535281 oxgr1 coding upstream 227946 6843606 ~ 6845500 (-)
si:ch73-116o1.2 LOC108266255,LOC108430494,LOC107551943,LOC107600440,LOC107663912,LOC107733654 coding upstream 342186 6957846 ~ 6971100 (-)
G77840 NA non-coding downstream 200961 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 239035 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 247622 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 273896 6253870 ~ 6255150 (-)
G77763 NA non-coding downstream 326273 6202569 ~ 6202773 (-)
G78172 NA non-coding upstream 461761 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 569773 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 661159 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 699037 7314697 ~ 7340303 (-)
G78259 NA non-coding upstream 726846 7342506 ~ 7343664 (-)
LOC117597343 NA other downstream 204366 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 275700 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1189413 5331584 ~ 5339633 (-)
G77283 NA other downstream 1684167 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2712987 3786956 ~ 3816059 (-)
G78159 NA other upstream 428127 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 833388 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 928846 7544506 ~ 7549631 (-)
G78626 LOC108266388 other upstream 1129066 7744726 ~ 7747638 (-)
G79221 NA other upstream 2049030 8664690 ~ 8665579 (-)

Expression


Co-expression Network