si:ch211-269e2.1 (LOC108266307,LOC108426064)


Basic Information

Item Value
gene id si:ch211-269e2.1
gene name LOC108266307,LOC108426064
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14514548 ~ 14534214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912496.2
TCCGCACAGCGCGCGCTGGCATTGTTCAGGCACGAGAGCACTAGGTGGCGCGCTCCGGAGCCGCTGTTCACCTTCTCATGTCTTCAGCACAGAGTGTCTCAGGCCAGTATCACTCAGCACTGTGAATCAAAAGAtgtgaaaacaggaagtcaatACCGCAAAATGATCTGAGAAGAGATGATAGCAGAACCAACCTTACTCTCGAGAACAGTGCAAAAagagAACACTAGTGTTGATGTCTCTTCCTGCACATCTGTGAATCATGCCTCTGGTGtgagaaatgaaaacagaaagaagaatgTGAGAGGGAAGAGGAAAGCCCGAGATGGCTCAGAGAATGCTAAGCAGAAGCTCTCAAAGACCAGCCATGGTACCCTGGGCAGAGCAGAGAATGAGCAGCTCAAACATGGAGACATGGAAGCCTTCACCTTGTTCGAGGTGGTCACTATGGGCAGGAGCGCCATGCAGGCTGTGGTTGATGACTGGATTGAGGCTTATGGTATGGACAGAGAACCAGCCCTGCTTGACCTCATCAGCTTCTTCATTCAGTGTTCAGGATGCAAAGGGGTAGTAACTGCTGAGATGTTTCAGAGCAAGGAAGATTCAGATGTCATGAGCAAAATGGTGGAGGACCTGGATGAGAGCTCAGGTTTGCAGTATAAAAGGTTTCTGGCGTTTCCATGGATACTGACTGTAACATGGCCCATGGACATTGAGAATGGCGAGTATCCTCTTGTTATGTCTGGTCTGTACTGGAAAAAGTTCCGCTCTCACTTTTGTGAGTTTGTCTCAGTGCTGATATCACAGTGTCAATATAGCGTGATCTTTGACAACTACCTCCTGAATACACTCATCTCTCTGCTGACTGAGCTCTCAGCATCACATATGCGTGCCTTCAGACACACGTGCACACTGGCAGCAGTAAAGTTGCTCAGCGCTCTAGTGAATGTGGCACTCAACCTCAGCATTAGTGTGGAGAACAACCAGAAACTCTGTGAGGTTGAGCTGGCCAAGATGTCCAGCAAGCGAGCCTCACCACGCCTGGACAAGATCCAGAAGAAGATTACTGAGCTGAAGGATAGAAAGCTTGAAATAGAAGATATGATGGATGCTATTTTTAAAGGAGTTTTTCTTAAAAGATACAGAGATGTGATACCTGAGATCAGGGCTATCTGTATAGAGGAACTGACTATATGGATGAAGCTTTACAGTGCAGTGTTTCTTAATGATACCTGTCTGAAATATGTAGGATGGATGATGCATGACAAGCAACCTGATGTGCGCTTGAAGTGTGTGTTGGGTCTGCAGGGACTTTATCAGGATGTTAATCTTAGCTCCAAAATGGACCTTTTCACCAGTCGATTTAAGGAGAGAATGATCTCCATGACCTTGGATAAGGACCACGAGGTAGCAGTGCAGGCAGTGAGGCTGCTGATGGCCGTTGCCCAGTCATGTGATGATGTGCTGAGCCAGGCTGACTACAAGCACATATTTCAGTTTGTATACTCTACTCATCGACCAATTGCAACCATGGCAGGGGAATTTCTCTTCACCAAGTTACTCAGTAAACCGGCAGTGACAGTGATGAGGGCAGGAGCATCAGAGgaggacagacacagagagctCACCCTGGCCCGGCTCCGAGCCCTTATTCAGTTTCACACTGAGAACCAGTTGCACCAGCACGTGCTGTATCTGGTGGACAGTCTGTGGGATAGTGGTGGGTCTCTGCTGAAGGACTGGGCCTTTTTCACCTCTCTGCTCACAGCTCAACCTTCCTCATTGGAGCAAGCTTTGAGCAGCACTGAGGAAGCTCTGGTGATTGAGATTCTTTCGGCGTCAGTGAGGCAGGCTGCTGAGGGACCTCCACTAGCAGGGAGAAGCACTGGGAAGAAAGTGATCAGTACAAAAGAGAAGAGGTTACAGACAGATGACTGTGCAAAACTTACAGAACACTTCTTAAAGGTGCTACCTGATCTGTTATCCAAGTACTCAGAAGATGCTGAAAAACTTACATCTTTCCTCAAAATACCTCAGTACTTTCAAATGGACGCTTGTGGCGATGAATACACAGAGTCTGTGCAGGCACTACTCACTGGTTTGGAGGCTGCAGTGGattcacacacagaggcagcaCTACTAGAAGCAGCTGTTCGCTCATACCATAACCTCTGTGCAAATGATTCACACTGGCAGCACCTGGCAGCTTCTGCCATAGGCCAACTCAACCAGCgctggacacacacactggagtcATGCTTAGGAGAGGCAGTCATTgaTGGAACTTTCATTGGAGATGGagacaaaaaggaagaaattcTGTCCACTTTGAAAAAATTAACTGCTTTCAACAATGCTCAGGACCTGACTAAATGGGGCACATATGAGCTGGTCTCAAAGCTCCTTGTAGTTGAGTTAGAGCACGGAGGTGTGCCAGTAGAGATGATCACTGAGGCTCTGCGCTGTGTCTGCTGCTGCATCCTGTGGAACCTGAACAACTTTGGAGAAGGAGTGACCTCCAGGgagtCAGCTCTCCGTCAGAGAAGTCAGCTACGAGCTTTTTGTGAAAAATGCCACCGATATCTTTCACACACGGAGCAGGTGGTGAGAGAGCAGGCATTTATGTGTTTGAGTGATGTCCTCGTAGCCCACAGTTACCAGCTACAGATGTGGGATTCATCAGCAGGTGCTCCTCTGCTCTACACTCCTGAACCCAGACTGCAGAAAGCGCTGCTTAGCTTCATCCTAGAGCATGTCTTCACCAGCCCAGAGCCACACGGCCACAGCAGCACTGgCAGTGAGACTAAGGGTGGGGTGACCTGGCTGGAGGACTTGCACAAGCGGAGGAATCTGTTGGCTGCCTACTGTAAACTGATAGTGCACAGTGTGCTTGAGATGAGTATGGCTGCTGAGATCTTCAAGCACTACATGAGGTACTACAATGACTTTGGCGATATTATCAAAGAAACTCTGAACCGCACCCGACAAATGGACAAGATTGAAAGCGCACGCACCCTGGTTCTGTGCCTTCAGCAGCTGTACCTGCGGTTGAAGCAGGAGCAGGACACAGGGAGCGTGTGCAGTTCAGAAGTGCAGACCTACAGCAGCATCAAAGAGCTGGCCAGACGCTTCTCGCTCACCTTCGGCTGGGATCAGATCAAATCCCGCGAGTCTCTGGCCATGATCCACAGGGATGGCATTGAGTTTGTTTTCCAGGGTTTTGTTCAGCAGTCAGAGAAGCACTCGCCGCCGTACCTCTCTTACCTCACCATCCTCAGCGAGTTCTCCAGTAAGCTGCTCAAACCTGACAAGAAGACCATATATAGCTATCTGCAACGGTACACTGGTGAGCAGAGCATCAGTAACAGGGAGGAGTGCTGGATGCCTCTCATCTATTACAGAGCGTCTCTCCAGGGCACAGCTGAGGGAGAAGACGCCGTGTCCTTCATCAGCTCTGACACTAATAAACAGCTCTCACTCAGTAATCGTTCCAGATCGCCCTCCACCAAACCGGCTGCATCTGAAGGAGAGCTGCGAATCTCACAAGCGTGTACAGAAAATAAAGGGAGCAAACAGCTGAAAAGCCAGGAGCTGAGAGTTGCAGAACAGTTCGCTGTACTCAGAGAGCAGCCTGAAAGCAGGGGAACAGTTGATATCCAGCCAGGGGTCACTGCTGAGGAAGTGGACGTGGACACAATAGAAATAGACATTTGATGTCCTCATGAAAGTCTGTTCTAAGATGTTCATTGACGGTAATGCGAATGACAGAGTGTTCAATGTGCCTAAGATGTTTCCTCTTCATACTCCATATGACCTCAttcaatatattaataattactgTAAACAGTGATGTAATGCCTTGGTGCTAAAGACATTAATTATTGGTTTTACATTGcataatttctttttgttctcaTCTAAACCAGATCTAAGCTAAAGATGATAGAATGTGCATTTTGtcttctttgctgttataatacaTTGGGcacgttttttttcctctgaaataCATGAAGCTAGCCACtgtatcttttcaaactgctgctcatgctacatcacagtaCATCGTAAAACACTCGGggggaaagtgctatctgccctctttcacgcacgcacgcacacaagcACGCAAGCACACAGAGCTGTttaaatgacaattttttatGTATGAGTGTACATTAGCTAGATGTGCTGTCTTAGCACTGACTTAATTACTTTAATGAGCTGAACTTTAAAACCTTTGACCCATCTTTGGCATATATGATTCCATATAAAacccactgtatattttttatgattctaaaacagtgagagagaattAGGAAATCAGGACGGTTACATTCCTACATTGCAGGTAAGCTATACCCAGTGTCCATATAATCCACTATACTGTTCTCCATCATTTTGTCTGTtctttgaaatgtttgaaatgatattaggaaatgtttaatatttgggTATGACCCAAACcaaactttatttcttttcagtttcagattaATGTTCACATATTTGTTTGCATTGTATAGATATACAGcttgtatttaatattcactttccactgtcatttcttttattaaaaaaaaaaaaaaca

Function

NR:

description
cohesin subunit SA-2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912496.2 True 4594 mRNA 0.46 32 14514548 14534214

Neighbor

gene id symbol gene type direction distance location
shox shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding downstream 83123 14422550 ~ 14431425 (-)
tfdp1a tfdp1,tfdp1a,LOC108266453,LOC108426071,LOC107748134,LOC107597491,LOC107595816,LOC107756763 coding downstream 232911 14271488 ~ 14281637 (-)
jam2b LOC108266454 coding downstream 255142 14253904 ~ 14259406 (-)
gabpa gabpa,LOC107756759,LOC107695462,LOC107595806 coding downstream 261255 14247469 ~ 14253293 (-)
si:dkey-192g7.3 NA coding downstream 291170 14213543 ~ 14223378 (-)
si:ch211-218d20.15 NA coding upstream 197 14534411 ~ 14537191 (-)
rpl8 rpl8,LOC107595836,LOC102782025 coding upstream 57503 14591717 ~ 14594494 (-)
caska cask,caska,LOC107565944 coding upstream 84808 14619022 ~ 14759714 (-)
mao maob,mao,LOC108266753,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828 coding upstream 259692 14793906 ~ 14824547 (-)
efhc2 efhc2 coding upstream 308286 14842500 ~ 14851402 (-)
LOC117597393 NA non-coding downstream 160608 14341038 ~ 14353940 (-)
G82604 NA non-coding downstream 218738 14293937 ~ 14295810 (-)
LOC113526223 NA non-coding downstream 562715 13943807 ~ 13951833 (-)
LOC113526249 NA non-coding downstream 595342 13917103 ~ 13919206 (-)
LOC113523953 NA non-coding downstream 625022 13886647 ~ 13889526 (-)
G82756 NA non-coding upstream 67531 14601745 ~ 14605015 (-)
G82757 NA non-coding upstream 139994 14674208 ~ 14729951 (-)
G82758 NA non-coding upstream 178368 14712582 ~ 14737784 (-)
G82759 NA non-coding upstream 193643 14727857 ~ 14792165 (-)
G82849 NA non-coding upstream 385535 14919749 ~ 14920280 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 659362 13762417 ~ 13855186 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 1264000 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 1786511 12713065 ~ 12728037 (-)
irs2b irs2 other downstream 2006860 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 3054223 11450212 ~ 11460325 (-)
med14 med14,LOC107756768 other upstream 4654 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 293461 14827675 ~ 14837409 (-)
dcaf6 dcaf6 other upstream 515669 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 572735 15106949 ~ 15114695 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 1409526 15943740 ~ 15973914 (-)

Expression


Co-expression Network