tfdp1a (tfdp1,tfdp1a,LOC108266453,LOC108426071,LOC107748134,LOC107597491,LOC107595816,LOC107756763)


Basic Information

Item Value
gene id tfdp1a
gene name tfdp1,tfdp1a,LOC108266453,LOC108426071,LOC107748134,LOC107597491,LOC107595816,LOC107756763
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14271488 ~ 14281637 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913166.2
TCCAATCAGCTGTGGCGTGTGGTGGACACCGCCAAGCTCAGTTTTCGCTCGGACCGGAGAGGGAGTAGTTTGTACACCAGTTACGCTTTGGTTCATTCAGGGCTACTGGTACAACACAGAGGACAAAGCGTGAATGCAGTCAACTCACTGTTTCTTTCGCAGGAGTACATTGGTGTGAACATTCAGCGCTGCTTCTCTGGTTAGACCCAGCCTTTGCTCCTCTTCCCCAAGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGACCAGAATCTGAGTCCAGGTAAAGGAGTTTTGTCTTTAGTGACTGTACATCCACAGTCAGTTGCAGTAGGAAAACAACTTTTGCCAAAAACCCTGGGCCCTTCAAATGTCAACATTGCTCCTCAGATGGTCATTGGGACACCTCAGAGGCCAAGTGGGTCCAACGTGCTCCTAATGAACAGtcctcacacacccagctctcAGTTCATCACTCAGAGCCAACCTCCTGATGCCTCTCCGTGGTCCTCAGGGAAAAGAAGTAAGAAGGGGGAAAAGAACGGGAAAGGTCTGAGGCATTTTTCTATGAAGGTGTGTGAGAAGGTACAGAAAAAGGGTGTTACCACATACAATGAAGTAGCAGATGAGCTGGTGGCCGAATTCAGCTCTGGTGACAACCACATCTCCCCAAATGATGCGCAAGTATATGATCAGAAGAATATTCGGCGGCGTGTATATGACGCTCTCAATGTGCTGATGGCCATGAACATAATTTcaaaggagaagaaggagatcAAGTGGATTGGGCTTCCCACCAACTCAGCCCAGGAATGCCAGAATCTGGAGGTGGAGAGGCAAAGACGTCTAGAGAGAATCAAGCAAAAACAGTCACAACTCCAAGAACTCATTTTACAGCAAATTGCGTTTAAGAACCTTGTGCAGCGTAACCGCCAAACAGAACAGCAAACAAACAGACCACCACCAGAAAATTCAGTCATTCACCTGCCCTttatcatcataaacaccagcAAGAAAACTGTCATTGACTGCAGCATCTCCAATGACAAGTTTGAGTACCTCTTCAACTTTGACAGCATGTTTGAGATCCATGATGATATTGAGGTATTGAAGCGCATGGGCATGGCATGTGGCCTAGAGGTTGGCAAGTGCTCTGCTGAAGACCTCAAAGTTGCCAGGAGCCTGGTGCCTAAAGCACTGGAGCCTTATGTCACAGAAATGGCACAGGGTCCAATCAGTAACGTCTACATGACAGGGACTTCATCTGCCAATGGGAGTCGCTATCATATCAGCAGTGAAAGTGGAGCAGATGGAACAATGGCCTCCAGCTCCAATGACTCACACTACAGTGGTTCTCGGGTCGAAACCCCAGTTTCTTACATGGACGAtgacgacgacgatgatgacTATGATGAAAATGACGAAGATGACTAACCCTCTCAGGCCACACTTCCTCCAACAGCTATATTCGTGGGGTTTATTGTATACACACAAGCTTCCTCTCCCCGTCTGCTACTAGCACACCTTtaatttccctctctctctttttatcttgAAGGGCATTGAGAAGCATGGGCTTTAAAGAGGTGTGTTGATTTCATCCAGCCCTTTCTGCTGTATGGCTTAGGCTGTTAAATCACAGCACCGTGCTAGTGCGGATATTTGGTCCTGATAGCTCTAGTTTTCAA
>XM_026913167.2
TTTAGCATTAGCACAAATTGATGTACATTTACTTCTGGAATTGAGCCACATTGGCATGTAGGCTCACTTAGGTAGAGCGTGTTATCTTTCATCAGCATTAGCTGGTAAGCTAAACGGCTAGCTGCGTTTGCCAGTTAGCTCACTGCTGGCTAGTTAGCTGTCGCCAGCTTCAGAGAGAATAAGCACAGTCGTTTGCGTCGCCGGCTAGCTCTCCTGACTTCCATGAAGACAGTCTGAACAGGCTCCAGGACGCCCTGTTTATCGCTATATAACCAACTAAAAAAAGAGATAACTAGTTGCACCagtgtgttgttattgttagtattattttttacaggTACAGGATGTTAAAACGGCACCAGGGATCAGTGTCTTGAACATGATCTGACCAGATCTGATGGATTTCCAGCTCATTCTCTCCGTCTTCTATCACGCTGGCTAATCAACAATAGAGATGTTAATATCCGGCCAGTTCTCTGCGAGGTTCACGTCGTCGTGTTTGCACCCGTTTGATTTAACGGATGTCTAactgaaatgtataaatgaggAGGATCAGTGGTTGATCATCAGGCCTGTGACACATGAACAGTCGAGAAATACCACTTGGCTTAGCATGTAAAAATGGCTGACCTAGCAAAAGCACGGGGCTGAGacatttttttgcttctttgctttcctgaTACAGCTCACCCGTGCAAATATGAACTGCTATTTGGTTAAGGAAACATAGTTATTCTCGGACAGTTTAGTTTCGTCGACCTTCATATGGtctacatttacagtatttggcTGCTCCGAGCACTGTTTCTTTCGCAGGAGTACATTGGTGTGAACATTCAGCGCTGCTTCTCTGGTTAGACCCAGCCTTTGCTCCTCTTCCCCAAGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGACCAGAATCTGAGTCCAGGTAAAGGAGTTTTGTCTTTAGTGACTGTACATCCACAGTCAGTTGCAGTAGGAAAACAACTTTTGCCAAAAACCCTGGGCCCTTCAAATGTCAACATTGCTCCTCAGATGGTCATTGGGACACCTCAGAGGCCAAGTGGGTCCAACGTGCTCCTAATGAACAGtcctcacacacccagctctcAGTTCATCACTCAGAGCCAACCTCCTGATGCCTCTCCGTGGTCCTCAGGGAAAAGAAGTAAGAAGGGGGAAAAGAACGGGAAAGGTCTGAGGCATTTTTCTATGAAGGTGTGTGAGAAGGTACAGAAAAAGGGTGTTACCACATACAATGAAGTAGCAGATGAGCTGGTGGCCGAATTCAGCTCTGGTGACAACCACATCTCCCCAAATGATGCGCAAGTATATGATCAGAAGAATATTCGGCGGCGTGTATATGACGCTCTCAATGTGCTGATGGCCATGAACATAATTTcaaaggagaagaaggagatcAAGTGGATTGGGCTTCCCACCAACTCAGCCCAGGAATGCCAGAATCTGGAGGTGGAGAGGCAAAGACGTCTAGAGAGAATCAAGCAAAAACAGTCACAACTCCAAGAACTCATTTTACAGCAAATTGCGTTTAAGAACCTTGTGCAGCGTAACCGCCAAACAGAACAGCAAACAAACAGACCACCACCAGAAAATTCAGTCATTCACCTGCCCTttatcatcataaacaccagcAAGAAAACTGTCATTGACTGCAGCATCTCCAATGACAAGTTTGAGTACCTCTTCAACTTTGACAGCATGTTTGAGATCCATGATGATATTGAGGTATTGAAGCGCATGGGCATGGCATGTGGCCTAGAGGTTGGCAAGTGCTCTGCTGAAGACCTCAAAGTTGCCAGGAGCCTGGTGCCTAAAGCACTGGAGCCTTATGTCACAGAAATGGCACAGGGTCCAATCAGTAACGTCTACATGACAGGGACTTCATCTGCCAATGGGAGTCGCTATCATATCAGCAGTGAAAGTGGAGCAGATGGAACAATGGCCTCCAGCTCCAATGACTCACACTACAGTGGTTCTCGGGTCGAAACCCCAGTTTCTTACATGGACGAtgacgacgacgatgatgacTATGATGAAAATGACGAAGATGACTAACCCTCTCAGGCCACACTTCCTCCAACAGCTATATTCGTGGGGTTTATTGTATACACACAAGCTTCCTCTCCCCGTCTGCTACTAGCACACCTTtaatttccctctctctctttttatcttgAAGGGCATTGAGAAGCATGGGCTTTAAAGAGGTGTGTTGATTTCATCCAGCCCTTTCTGCTGTATGGCTTAGGCTGTTAAATCACAGCACCGTGCTAGTGCGGATATTTGGTCCTGATAGCTCTAGTTTTCAA
>XM_026913168.2
AAGGCGAGCACAAGGCATTTCTTTAACTTTCCTTACAAATACCAGTGACACTAGCTCTAAAtaatgcttttttcccctcttcccGAGTCTAATATGTACAAATTAGTGTTGATTGTCGATAAGCAGCTGCTGTCTTGCTGACTGGTTCGCATCCATTTTGTTGATGCAAGTTAGCTAGCTGTGGAGAAATAAAGAGGTCAGAGACAGGAGTGAACTGTTCATCtgtgtggggggaaaaactTTTGGCCGATCGATTGCTGGAGCAAGATTTTAGTATAATTGTAAACTTTTATATGAATAGTAATTGGATTATTGTTTCCTGTTTTGAGAGGGGCTTTCAGACCTCCTCTTCCTCTATTCTTaaagctaagctagctagtgAGCTATGCCAACAAAACCCCAGGACCCAAGAAGGTAGGGTGCTCAAGACAGTGTTCAGGCGTTAAGTTCACTGCAAAGTTTGCCTAGTTCACTTTCTAATGGCCGATCAATCACCGATCTATCACCGATCTGTCCACTGAGCTTGGCTTTGGGCAGCGGGGTTCTGCTTTGGAGCGGATGACCGACAGCGAGCGCGTTTTGTGTGCATTTAAATGAGGCTTTCGCTGCAAAACAACGTGTTTCCAGAGCAGCTAGCTGGCCGGCTAACTCTGCTAGCATGCTCCACATTGTACCTCCTGTCTGGCCCTGGTTGTTGACGGTTTTTCCCCTCTAGATCAGCACTGTTTCTTTCGCAGGAGTACATTGGTGTGAACATTCAGCGCTGCTTCTCTGGTTAGACCCAGCCTTTGCTCCTCTTCCCCAAGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGACCAGAATCTGAGTCCAGGTAAAGGAGTTTTGTCTTTAGTGACTGTACATCCACAGTCAGTTGCAGTAGGAAAACAACTTTTGCCAAAAACCCTGGGCCCTTCAAATGTCAACATTGCTCCTCAGATGGTCATTGGGACACCTCAGAGGCCAAGTGGGTCCAACGTGCTCCTAATGAACAGtcctcacacacccagctctcAGTTCATCACTCAGAGCCAACCTCCTGATGCCTCTCCGTGGTCCTCAGGGAAAAGAAGTAAGAAGGGGGAAAAGAACGGGAAAGGTCTGAGGCATTTTTCTATGAAGGTGTGTGAGAAGGTACAGAAAAAGGGTGTTACCACATACAATGAAGTAGCAGATGAGCTGGTGGCCGAATTCAGCTCTGGTGACAACCACATCTCCCCAAATGATGCGCAAGTATATGATCAGAAGAATATTCGGCGGCGTGTATATGACGCTCTCAATGTGCTGATGGCCATGAACATAATTTcaaaggagaagaaggagatcAAGTGGATTGGGCTTCCCACCAACTCAGCCCAGGAATGCCAGAATCTGGAGGTGGAGAGGCAAAGACGTCTAGAGAGAATCAAGCAAAAACAGTCACAACTCCAAGAACTCATTTTACAGCAAATTGCGTTTAAGAACCTTGTGCAGCGTAACCGCCAAACAGAACAGCAAACAAACAGACCACCACCAGAAAATTCAGTCATTCACCTGCCCTttatcatcataaacaccagcAAGAAAACTGTCATTGACTGCAGCATCTCCAATGACAAGTTTGAGTACCTCTTCAACTTTGACAGCATGTTTGAGATCCATGATGATATTGAGGTATTGAAGCGCATGGGCATGGCATGTGGCCTAGAGGTTGGCAAGTGCTCTGCTGAAGACCTCAAAGTTGCCAGGAGCCTGGTGCCTAAAGCACTGGAGCCTTATGTCACAGAAATGGCACAGGGTCCAATCAGTAACGTCTACATGACAGGGACTTCATCTGCCAATGGGAGTCGCTATCATATCAGCAGTGAAAGTGGAGCAGATGGAACAATGGCCTCCAGCTCCAATGACTCACACTACAGTGGTTCTCGGGTCGAAACCCCAGTTTCTTACATGGACGAtgacgacgacgatgatgacTATGATGAAAATGACGAAGATGACTAACCCTCTCAGGCCACACTTCCTCCAACAGCTATATTCGTGGGGTTTATTGTATACACACAAGCTTCCTCTCCCCGTCTGCTACTAGCACACCTTtaatttccctctctctctttttatcttgAAGGGCATTGAGAAGCATGGGCTTTAAAGAGGTGTGTTGATTTCATCCAGCCCTTTCTGCTGTATGGCTTAGGCTGTTAAATCACAGCACCGTGCTAGTGCGGATATTTGGTCCTGATAGCTCTAGTTTTCAA
>XM_026913169.2
GTCCAATCAGCTGTGGCGTGTGGTGGACACCGCCAAGCTCAGTTTTCGCTCGGACCGGAGAGGGAGTAGTTTGTACACCAGTTACGCTTTGGTTCATTCAGGGCTACTGGTACAACACAGAGGACAAAGCGTGAATGCAGTCAACTGAGTACATTGGTGTGAACATTCAGCGCTGCTTCTCTGGTTAGACCCAGCCTTTGCTCCTCTTCCCCAAGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGACCAGAATCTGAGTCCAGGTAAAGGAGTTTTGTCTTTAGTGACTGTACATCCACAGTCAGTTGCAGTAGGAAAACAACTTTTGCCAAAAACCCTGGGCCCTTCAAATGTCAACATTGCTCCTCAGATGGTCATTGGGACACCTCAGAGGCCAAGTGGGTCCAACGTGCTCCTAATGAACAGtcctcacacacccagctctcAGTTCATCACTCAGAGCCAACCTCCTGATGCCTCTCCGTGGTCCTCAGGGAAAAGAAGTAAGAAGGGGGAAAAGAACGGGAAAGGTCTGAGGCATTTTTCTATGAAGGTGTGTGAGAAGGTACAGAAAAAGGGTGTTACCACATACAATGAAGTAGCAGATGAGCTGGTGGCCGAATTCAGCTCTGGTGACAACCACATCTCCCCAAATGATGCGCAAGTATATGATCAGAAGAATATTCGGCGGCGTGTATATGACGCTCTCAATGTGCTGATGGCCATGAACATAATTTcaaaggagaagaaggagatcAAGTGGATTGGGCTTCCCACCAACTCAGCCCAGGAATGCCAGAATCTGGAGGTGGAGAGGCAAAGACGTCTAGAGAGAATCAAGCAAAAACAGTCACAACTCCAAGAACTCATTTTACAGCAAATTGCGTTTAAGAACCTTGTGCAGCGTAACCGCCAAACAGAACAGCAAACAAACAGACCACCACCAGAAAATTCAGTCATTCACCTGCCCTttatcatcataaacaccagcAAGAAAACTGTCATTGACTGCAGCATCTCCAATGACAAGTTTGAGTACCTCTTCAACTTTGACAGCATGTTTGAGATCCATGATGATATTGAGGTATTGAAGCGCATGGGCATGGCATGTGGCCTAGAGGTTGGCAAGTGCTCTGCTGAAGACCTCAAAGTTGCCAGGAGCCTGGTGCCTAAAGCACTGGAGCCTTATGTCACAGAAATGGCACAGGGTCCAATCAGTAACGTCTACATGACAGGGACTTCATCTGCCAATGGGAGTCGCTATCATATCAGCAGTGAAAGTGGAGCAGATGGAACAATGGCCTCCAGCTCCAATGACTCACACTACAGTGGTTCTCGGGTCGAAACCCCAGTTTCTTACATGGACGAtgacgacgacgatgatgacTATGATGAAAATGACGAAGATGACTAACCCTCTCAGGCCACACTTCCTCCAACAGCTATATTCGTGGGGTTTATTGTATACACACAAGCTTCCTCTCCCCGTCTGCTACTAGCACACCTTtaatttccctctctctctttttatcttgAAGGGCATTGAGAAGCATGGGCTTTAAAGAGGTGTGTTGATTTCATCCAGCCCTTTCTGCTGTATGGCTTAGGCTGTTAAATCACAGCACCGTGCTAGTGCGGATATTTGGTCCTGATAGCTCTAGTTTTCAA

Function

symbol description
tfdp1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to several human genes including TFDP1 (transcription factor Dp-1).
tfdp1 Enables protein domain specific binding activity. Contributes to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

NR:

description
transcription factor Dp-1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913166.2 False 1713 mRNA 0.47 12 14271488 14281636
XM_026913167.2 True 2367 mRNA 0.46 12 14271488 14281471
XM_026913168.2 False 2288 mRNA 0.46 12 14271488 14280641
XM_026913169.2 False 1697 mRNA 0.47 12 14271488 14281637

Neighbor

gene id symbol gene type direction distance location
jam2b LOC108266454 coding downstream 12082 14253904 ~ 14259406 (-)
gabpa gabpa,LOC107756759,LOC107695462,LOC107595806 coding downstream 18195 14247469 ~ 14253293 (-)
si:dkey-192g7.3 NA coding downstream 48110 14213543 ~ 14223378 (-)
rcan1a rcan1,LOC108266951,LOC107748124,LOC107597484,LOC107656781,LOC107673717 coding downstream 428919 13833501 ~ 13842569 (-)
LOC117597444 NA coding downstream 438788 13831796 ~ 13832700 (-)
shox shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding upstream 140913 14422550 ~ 14431425 (-)
si:ch211-269e2.1 LOC108266307,LOC108426064 coding upstream 232911 14514548 ~ 14534214 (-)
si:ch211-218d20.15 NA coding upstream 252774 14534411 ~ 14537191 (-)
rpl8 rpl8,LOC107595836,LOC102782025 coding upstream 310080 14591717 ~ 14594494 (-)
caska cask,caska,LOC107565944 coding upstream 337385 14619022 ~ 14759714 (-)
LOC113526223 NA non-coding downstream 319655 13943807 ~ 13951833 (-)
LOC113526249 NA non-coding downstream 352282 13917103 ~ 13919206 (-)
LOC113523953 NA non-coding downstream 381962 13886647 ~ 13889526 (-)
G82055 NA non-coding downstream 915794 13354741 ~ 13355694 (-)
G82035 NA non-coding downstream 938985 13332290 ~ 13332503 (-)
G82604 NA non-coding upstream 12300 14293937 ~ 14295810 (-)
LOC117597393 NA non-coding upstream 59401 14341038 ~ 14353940 (-)
G82756 NA non-coding upstream 320108 14601745 ~ 14605015 (-)
G82757 NA non-coding upstream 392571 14674208 ~ 14729951 (-)
G82758 NA non-coding upstream 430945 14712582 ~ 14737784 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 416302 13762417 ~ 13855186 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 1020940 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 1543451 12713065 ~ 12728037 (-)
irs2b irs2 other downstream 1763800 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 2811163 11450212 ~ 11460325 (-)
med14 med14,LOC107756768 other upstream 257231 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 546038 14827675 ~ 14837409 (-)
dcaf6 dcaf6 other upstream 768246 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 825312 15106949 ~ 15114695 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 1662103 15943740 ~ 15973914 (-)

Expression


Co-expression Network