LOC113547047 (LOC108266892,LOC108266896,LOC108266891,LOC108266899,LOC108262141,LOC108266212,LOC108266890,LOC108266893,LOC108266894,LOC108266242)


Basic Information

Item Value
gene id LOC113547047
gene name LOC108266892,LOC108266896,LOC108266891,LOC108266899,LOC108262141,LOC108266212,LOC108266890,LOC108266893,LOC108266894,LOC108266242
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8081736 ~ 8085066 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947230.2
CGACTACAGTCTTTCATAAACAGCTGCAGTGTTCTGCTCTGAAGCAAAACTGAATCTCATTCAGGCTGGAACAaataacaacagcaaaagaaaatggaggaggATTTCTGAAAGTGCAGCTCAGACTGGAGAGAACAagagcagtaaaataaaatggcttcCAAGTTTTCAGAGGAGGATTTCTCCTGTCCTGTGTGCTGTGAAATCTTCAACAATCCTGTTGTTCTGCACTGcagtcacagtgtgtgtaaagtgtgtttgcAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGGAAGTCGTCTCTAGAAACCCCTCCCACAAACTTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGATCTTCATCAGTGTCTGAAACAGTCTGCAGTTTGCACAGTGAGAAACTCAAACTCTTCTGTCTGGATGATCAACAGCCGGTGTGTTTGGTGTGTCAGACTTCAAGAAAACACACCAACCACAAATTCTGCCCCACTGATGAGATAGTAACAGACTGTAAGGAGGAGCTCAAAACCATACTACAGCCCCTACAGGAGAAACTGAAGATCTTTAAAGACTGTAAACTGAACTGGAGTCAGACTGCAGAACACATAAAGATTCAGGCCCAACACACAGAGGGGCAGATTAAGGAGGAGTTTGAGAAGCTTCATCAGTTTCTACGAGATGAAGAGGCAGCCAGGATCGCTGcactgagagaggaagaggagcagaagaGTCAGATGATGAAGGAGAAGATTGAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACAATCAGAGCCATAGAAGAGGAGATGAGAGCTGATGATGTCTCGTTCTTACAAAACTACAAGGCCACAGTGAAAAGAGCTCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCAAAACATCTGTCCAACCTGAGGTTCAGAGTCTGGGGGAAGATGCAGGATGCTGTCCAATACAcacCTGTAACTCTGGACCCAAACACTGCTCATCCTAAACTCATTGTATCTGATGATCTGACCAGTGTGAGACTCAGTGCTGAGAAACAGGAGCTTCCTGATAATCCAGAGAGATTTGATGAATATGAATGTATCCTGGGCTCTGGGGGCTTTAACTCGGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACACAGTGGTCACTGGGTGTGATGACAGAATCTGCTCAGAGAAAGCGAGATATATTCACCAGAAGTGGAatctggtgtgtgtggtataagagcagtAAATATGCAGCATGCTCTACACCACATCCATCCACTCGCCTCTCAGTAGCACCGAAACTCCAGAGGATCAGAGTGCAGCTGGACTGGGACAGAGGAAAGCTTTCATTCTCCGACCCTCTtgctaaaacacacatacacacgttcaaacacacatttacagagaaattacTGCCATTTTTAACTGATAGACATAAACTGACTTCTCTGAAGATCCTCCCAATTGACTGTTCTGTAAGAGTGAATCAGTTAGAACcagttcataaataaaatattatatgtttaaggttaataatatttattatttatgaaagcTTGTCTTTGTTTAGATATATTCTTACAGTCCAGTTTGTTCTGTTGTGTcaacaaatatatttcagtcTTGCACAGACCTATAAtgtacactgtaaaacattttgtgtatcttCAACTTAAAAAGATTACATAACTGatttcatcatatttttaagttaACTCAACTTCATGGCTGATTTGTTTgctacaattacattttttttttgacataacAGGATCTAAATCCTGACCAAACTTAAAGTGCTTTGTTCTAGCCATTTAAAGTTCTCAGGCATAACTTATAATTTTAGGTTGACAGAACTTGATGAGTTAAGTCCTGGTAACTCAAAATTTCATGTTAGCTtttttagctaaaaaaaaaaacatattgtaatTAGTTAGTTAgaatcaaaaacacacaactgtatttttaatgagGCAACTGCACATCCTGCATGCACTGAACTACAATCATTAAAACTACTCAAAGGCATGttgaaaaaataatactttattaaCAGTAACAAGTAAAATAGGAGCAGTGTGTGCAATGTAAGGCACTTACCTGTCTTCTTCAGTAATCCCATGTAACGACACACGTGTCATGATTTGAGTCAATTCATGATTCTGGCTTCACGATTTCAattcgattctcagaatattttgtttgaagaaaaattatgactgaaa

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947230.2 True 2292 mRNA 0.40 7 8081736 8085066

Neighbor

gene id symbol gene type direction distance location
LOC113547016 LOC108266988 coding downstream 6330 8072599 ~ 8075406 (-)
spryd7b spryd7,LOC108266652,LOC107655514 coding downstream 51438 8026008 ~ 8030298 (-)
gtpbp8 gtpbp8 coding downstream 58531 8016869 ~ 8023205 (-)
slc10a2 slc10a2 coding downstream 83852 7992899 ~ 7997884 (-)
lcmt2 lcmt2,crygs,LOC103033891,LOC107756035 coding downstream 278149 7792959 ~ 7803587 (-)
LOC113547048 LOC108266893,LOC108266894,LOC108266891,LOC108266892,LOC108262141,LOC108266899,LOC108266212,LOC108266890,LOC108266242 coding upstream 2554 8087620 ~ 8091944 (-)
srpx srpx,LOC107555235,LOC107663918,LOC107748210 coding upstream 110874 8195940 ~ 8210153 (-)
tfg tfg,LOC107655517,LOC107720125 coding upstream 256066 8341132 ~ 8352685 (-)
jagn1a jagn1a,LOC108266178,LOC108432576,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC103032247 coding upstream 271295 8356361 ~ 8358881 (-)
col8a1a col8a1,col8a1a,LOC107720134,LOC108432575,LOC105911455 coding upstream 276214 8361280 ~ 8373366 (-)
LOC113546990 NA non-coding downstream 26238 8037299 ~ 8055498 (-)
G78768 NA non-coding downstream 35468 8046040 ~ 8046268 (-)
G78766 NA non-coding downstream 36200 8045135 ~ 8045536 (-)
G78759 LOC108266649 non-coding downstream 65330 8015940 ~ 8016406 (-)
G78750 NA non-coding downstream 97850 7983541 ~ 7983886 (-)
G78872 NA non-coding upstream 110126 8195192 ~ 8195477 (-)
G78965 NA non-coding upstream 167810 8252876 ~ 8297126 (-)
G78991 NA non-coding upstream 207692 8292758 ~ 8303999 (-)
LOC113525361 NA non-coding upstream 210446 8295512 ~ 8316355 (-)
LOC117597396 NA non-coding upstream 505747 8590813 ~ 8606197 (-)
G78626 LOC108266388 other downstream 334098 7744726 ~ 7747638 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other downstream 532105 7544506 ~ 7549631 (-)
LOC117597373 NA other downstream 630175 7449048 ~ 7451561 (-)
G78159 NA other downstream 1034927 7043787 ~ 7046809 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other downstream 1535783 6542433 ~ 6545953 (-)
G79221 NA other upstream 579624 8664690 ~ 8665579 (-)
si:dkey-229b18.3 LOC108266764 other upstream 589738 8674804 ~ 8683415 (-)
G79349 NA other upstream 686400 8771466 ~ 8772429 (-)
LOC117597331 NA other upstream 772753 8857819 ~ 8877236 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other upstream 911717 8996783 ~ 9019448 (-)

Expression


Co-expression Network