LOC113525361


Basic Information

Item Value
gene id LOC113525361
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8295512 ~ 8316355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578216.1
GCCAGAGCCAGACCTCGCCTACAGGAGGagaaacaacagcagaagccAACAACGAAGGAACGAGCGCGAGTGCAAACATCAAAGGAGGAGGTGCTGGGAGTCTGAGGAGGGAAGCAGGTCTGCCCTGAGTCACGCTGTGCAGAACTGCAGAGTGGAGCGTATCACAGAGGAGGTGCTGGGAGTCTGAGGAGGGAAGCTGGTCTGCTCTGAGTCACGCTGTGCAGAACTGCAGAGTGGAGCGTATCACAatttaaagGCACGTGcctgtgtttaaaggcagtggtcttGATGCTGAAAAACTCCACTCAGGAAAATTCCGAGAATCTTAAGTATTCACTAGTCAAGAAGTGTGAGCGTGTAACCACTTTGAGAGAATGATGATCACTTGACTACCACATTATCACACAGGTAGGTACTGCATTATTTAACCATGACAAGACAAAACAGTTAccatcattttcttttcagaatgTGGCCCATTGCAATACTAAGATGACATTCATCTTCTCCTTTCTTCCCTACTAAATCGCTCTgcataagggcatctgctaaatgatttaaatgttaagAACCACATGGCACAATTAACACATGGCACAACTAACATTTGAACCGGAAACAGAAAGGCTAGTAGTTGCATTTTCATCCATAGTCAGCACACTCCTCCACTCCTGATAATCTTTACAACATAAACACATAACACATGCTAGAGTAAAGTGAAAACTACACTTGTAAAACCCTTACACATAAAATAACACCACAAAGTTTAAGGCCTTTGCACATCATATCCCACACCCTGTCTGAGTCATAAACAAAAGCTTCACATGCATGATTATGAGAGaggataaagaataaaagtgggCTAATATGTCTGAAAACATTCAGCATGTGAATCCAATAGAATTCCCTGCCTGGTATAGAAGC
>XR_004578217.1
GCCAGAGCCAGACCTCGCCTACAGGAGGagaaacaacagcagaagccAACAACGAAGGAACGAGCGCGAGTGCAAACATCAAAGGAGGAGGTGCTGGGAGTCTGAGGAGGGAAGCAGGTCTGCCCTGAGTCACGCTGTGCAGAACTGCAGAGTGGAGCGTATCACAGAGGAGGTGCTGGGAGTCTGAGGAGGGAAGCTGGTCTGCTCTGAGTCACGCTGTGCAGAACTGCAGAGTGGAGCGTATCACAatttaaagGCACGTGcctgtgtttaaaggcagtggtcttGATGCTGAAAAACTCCACTCAGGAAAATTCCGAGAATCTTAATCACTAGTCAAGAAGTGTGAGCGTGTAACCACTTTGAGAGAATGATGATCACTTGACTACCACATTATCACACAGGTAGGTACTGCATTATTTAACCATGACAAGACAAAACAGTTAccatcattttcttttcagaatgTGGCCCATTGCAATACTAAGATGACATTCATCTTCTCCTTTCTTCCCTACTAAATCGCTCTgcataagggcatctgctaaatgatttaaatgttaagAACCACATGGCACAATTAACACATGGCACAACTAACATTTGAACCGGAAACAGAAAGGCTAGTAGTTGCATTTTCATCCATAGTCAGCACACTCCTCCACTCCTGATAATCTTTACAACATAAACACATAACACATGCTAGAGTAAAGTGAAAACTACACTTGTAAAACCCTTACACATAAAATAACACCACAAAGTTTAAGGCCTTTGCACATCATATCCCACACCCTGTCTGAGTCATAAACAAAAGCTTCACATGCATGATTATGAGAGaggataaagaataaaagtgggCTAATATGTCTGAAAACATTCAGCATGTGAATCCAATAGAATTCCCTGCCTGGTATAGAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578216.1 True 924 lncRNA 0.43 5 8295512 8316355
XR_004578217.1 False 920 lncRNA 0.43 5 8295512 8316355

Neighbor

gene id symbol gene type direction distance location
srpx srpx,LOC107555235,LOC107663918,LOC107748210 coding downstream 85359 8195940 ~ 8210153 (-)
LOC113547048 LOC108266893,LOC108266894,LOC108266891,LOC108266892,LOC108262141,LOC108266899,LOC108266212,LOC108266890,LOC108266242 coding downstream 203568 8087620 ~ 8091944 (-)
LOC113547047 LOC108266892,LOC108266896,LOC108266891,LOC108266899,LOC108262141,LOC108266212,LOC108266890,LOC108266893,LOC108266894,LOC108266242 coding downstream 210446 8081736 ~ 8085066 (-)
LOC113547016 LOC108266988 coding downstream 220106 8072599 ~ 8075406 (-)
spryd7b spryd7,LOC108266652,LOC107655514 coding downstream 265214 8026008 ~ 8030298 (-)
tfg tfg,LOC107655517,LOC107720125 coding upstream 24777 8341132 ~ 8352685 (-)
jagn1a jagn1a,LOC108266178,LOC108432576,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC103032247 coding upstream 40006 8356361 ~ 8358881 (-)
col8a1a col8a1,col8a1a,LOC107720134,LOC108432575,LOC105911455 coding upstream 44925 8361280 ~ 8373366 (-)
tmem30c LOC108266690 coding upstream 117589 8433944 ~ 8442486 (-)
cmss1 cmss1 coding upstream 126488 8442843 ~ 8454839 (-)
G78872 NA non-coding downstream 100035 8195192 ~ 8195477 (-)
LOC113546990 NA non-coding downstream 240014 8037299 ~ 8055498 (-)
G78768 NA non-coding downstream 249244 8046040 ~ 8046268 (-)
G78766 NA non-coding downstream 249976 8045135 ~ 8045536 (-)
G78759 LOC108266649 non-coding downstream 279106 8015940 ~ 8016406 (-)
LOC117597396 NA non-coding upstream 274458 8590813 ~ 8606197 (-)
G79184 NA non-coding upstream 298450 8614805 ~ 8615042 (-)
G79220 acp6 non-coding upstream 346573 8662928 ~ 8664415 (-)
G79223 NA non-coding upstream 350862 8667217 ~ 8667743 (-)
G79227 NA non-coding upstream 351760 8668115 ~ 8673751 (-)
G78626 LOC108266388 other downstream 547874 7744726 ~ 7747638 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other downstream 745881 7544506 ~ 7549631 (-)
LOC117597373 NA other downstream 843951 7449048 ~ 7451561 (-)
G78159 NA other downstream 1248703 7043787 ~ 7046809 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other downstream 1749559 6542433 ~ 6545953 (-)
G79221 NA other upstream 348335 8664690 ~ 8665579 (-)
si:dkey-229b18.3 LOC108266764 other upstream 358449 8674804 ~ 8683415 (-)
G79349 NA other upstream 455111 8771466 ~ 8772429 (-)
LOC117597331 NA other upstream 541464 8857819 ~ 8877236 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other upstream 680428 8996783 ~ 9019448 (-)

Expression


Co-expression Network