sema6dl (sema6d)


Basic Information

Item Value
gene id sema6dl
gene name sema6d
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1611811 ~ 1648286 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109967
tgtttgtctacctgcttctctctctctctctctctctctcgctctgtatatttacttatttctcTCTGACTATCTcttcatctgtttctctctctttccatatttttctgtgtttgtccCCCTCTCCCCTCCCTCTGTTAGATAAAAGAGGGAAAACAGGGAAGAAGGGAAAGCAGCCAAACCCACATTTGGTGAGGGGGTGAGAGACGGAGGGAAAGGGGCGGAGCCTGAGAGGGCGAGCGAcacagtgggcggggctaagGAGAGCGAGTGGGAGGAAGGACTAGCCTCTGATtggtgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcaggtttCAGCCTcggtgcgtgtgtgtatgtgtgtgttagtgtgtgtttttctcggTGGAGAGAAGTTGGAGGAGTTCGAGCTCGCGCTGGGATTGTTCTGACCCGAactggaatacacacacacacacacacacacacacacacacacaggagcgcGCGCGCGGATACACGTACACAAGGATACACGGGGATTCACGCGCGTGGACacggaacacacacacacacacggattcAGATGAGgtaacACCCCCGGGTGTGCATTCAGCAGAGGGAGATGTGGTGTGTAATGTTTCCcaacctgctgctgctgctgctgttggtgcGAACCCACGCCGTCAGTTTCCCCGAGGACACCGCACCTCTGGACATCGTGGACAGACAttATTCCCGACAGTATCCGGTTTTCCGAGGTCGGCCGTCCGGAAATGAATCCCAACATCGGCTGGACTTTCAGCTGATGACCAGGATCCAGGACACGCTGTTCATCGCCGGCAGGGACCAGGTGTACTTGGTGAGTCTGAGGGAGTCGTACAGGAATGACATCACTCCCTACAGGAAGTTGACGTGGAGGTCGAGTCAGGCGGACCGAGAGACGTGTGCGCTGAAGGGCAAACACAGGGATGAGTGCCATAACTT
>TU109968
gtgagagtgtgtttgtgtgtgtgtctcaggtttCAGCCTcggtgcgtgtgtgtatgtgtgtgttagtgtgtgtttttctcggTGGAGAGAAGTTGGAGGAGTTCGAGCTCGCGCTGGGATTGTTCTGACCCGAactggaatacacacacacacacacacacacacacacacacacaggagcgcGCGCGCGGATACACGTACACAAGGATACACGGGGATTCACGCGCGTGGACacggaacacacacacacacacggattcAGATGAGgtaacACCCCCGGGTGTGCATTCAGCAGAGGGAGATGTGGTGTGTAATGTTTCCcaacctgctgctgctgctgctgttggtgcGAACCCACGCCGTCAGTTTCCCCGAGGACACCGCACCTCTGGACATCGTGGACAGACAttATTCCCGACAGTATCCGGTTTTCCGAGGTCGGCCGTCCGGAAATGAATCCCAACATCGGCTGGACTTTCAGCTGATGACCAGGATCCAGGACACGCTGTTCATCGCCGGCAGGGACCAGGTGTACTTGGTGAGTCTGAGGGAGTCGTACAGGAATGACATCACTCCCTACAGGAAGTTGACGTGGAGGTCGAGTCAGGCGGACCGAGAGACGTGTGCGCTGAAGGGCAAACACAGGGTGagactgtttactgtttatttactccttactgtttattgtttactctttactgtttattgtttactgtttattgtttactctttactgtttattgtttacaccttactgtttatttactccttactttttatttactccttactgtttattgtttac
>XM_034305322.1
aggtttCAGCCTcggtgcgtgtgtgtatgtgtgtgttagtgtgtgtttttctcggTGGAGAGAAGTTGGAGGAGTTCGAGCTCGCGCTGGGATTGTTCTGACCCGAactggaatacacacacacacacacacacacacacacacacacaggagcgcGCGCGCGGATACACGTACACAAGGATACACGGGGATTCACGCGCGTGGACacggaacacacacacacacacggattcAGATGAGgtaacACCCCCGGGTGTGCATTCAGCAGAGGGAGATGTGGTGTGTAATGTTTCCcaacctgctgctgctgctgctgttggtgcGAACCCACGCCGTCAGTTTCCCCGAGGACACCGCACCTCTGGACATCGTGGACAGACAttATTCCCGACAGTATCCGGTTTTCCGAGGTCGGCCGTCCGGAAATGAATCCCAACATCGGCTGGACTTTCAGCTGATGACCAGGATCCAGGACACGCTGTTCATCGCCGGCAGGGACCAGGTGTACTTGGTGAGTCTGAGGGAGTCGTACAGGAATGACATCACTCCCTACAGGAAGTTGACGTGGAGGTCGAGTCAGGCGGACCGAGAGACGTGTGCGCTGAAGGGCAAACACAGGGATGAGTGCCATAACTTATTAAACATCCCAGGAAAGATGAtctctgtttcatcatgtggcACTAATTATCTATTACCCTATtgtaataacaCATCTGCCCCCCCACAGCTGGATAATCTGGAGTTTGATGGAGAGGAGATCAGCGGTTTGGCTCGGTGTCCATTTGACGCTAAACAGACCAACGTAGCGCTCTTCTctgatgggaAGCTGTACTCAGCTACAGTAGCTGATTTCCTGGCGAGTGATGCAGTGATTTATCGCAGTATGGGAGACGGATCGGCTCTGAGGACCATCAAATACGACTCCAAATGGCTGAaggaGCCTCACTTCCTGCACGCAGTGGATTATGGGAActatgtgtattttttcttcagAGAGATTGCAGCGGAACACAACAACCTGGGGAGGgcggTGTACTCTCGCGTGGCCCGGGTGTGTAAGAACGATGTGGGCGGATCTCAGCGTGTTCTGGAGAAACACTGGACGTCGTTTGTGAAGGCGAGACTGAACTGCTCCGTCCCCGGAGAATCCTTCTTCTACTTCGACGTCCTGCAGTCGctcactgacatcatcaacatcagCGGGGTTCCGTCTGTGGTGGGCGTGTTCACGACTCAGCtcaacagTATTCCAGGCTCGGCTGTGTGTGCCTTCTCCATGCCGGATATAGAGAAGGTGTTTGAGGGACGCTTTAAGGAGCAGAAGACTCCGGACTCGGTGTGGACTCCTGTTCCAGACGACAGACTGCCCCGACCGCGgccgGGATGCTGTGCTGGTCACGGATCAGCAGAATCTTACAAAAGCTCAGTCGAGTTTCCGGATGAAACGCTGCAGTTTATAAAGTTACACCCACTGATGGACGCCGCTGTGCCCTCCATCCGAGACGAGCCCTGGGTCACCAAGACCAGAGTCAGgtacCGGCTGACGGCTCTGGCGGTGGATAACGCAGCAGGTCCCTATAAGAACTACACGGTGGTGTTTATTGGCTCTGAGGCGGGCGTGGTTCTGAAGGTTCTGGCGAAGACGGCGGTGTTTTCGTTAAACGAGAGCGTGCTGCTGGAGGAGATCGACGTCTTTAACCAGGCCAAgTGTCTGTCTAACAGTGAGGACGACAGGCGTGTCCTCTCCTTCCACttggacagagacacacacacactgtatgtggCCTTCTCCAGCTGTGTGGTGAGAATCCCGCTGAGCCGCTGTGAGAGACACCGAACCTGTCAcaagtcATGTATTGCGTCCAGAGATCCGTACTGTGGTTGGATGTCACATGGGGCTTGTGAAAGGATTCCAGCAGGAGTGGatgGGTTTGAGCAGGATGTGGAGTTCGGGGATACGGGGCGTCTCGGTGACTGTCACGAGTTTATGACTACCGCTTCAGCGCCAGGTTTCAAATCATATGGCGACGCAACTTCTGGCATTTGGGAGATCCAGTCGGCCGACTCCAACCAGCTGGTGCACATGAACATCCTGATCACGTGCGTCTTCGCTGCGTTCCTGTTGGGGGCGTTCATCGCCGGCGCTGTGGTCTACTGCTACCGAGACGTCTTCCTGCACAAGAAGACGCGCAAAATCCACAAAGCGGCGCACAGTAAAGACGAGGAGTCGGCACCGTCACGCACTGACTCCACCGGGAGCTTCACCAAGCTGAACGGCCTCTTCGAGAGTCCGGTGAAGGAATTTCCCAGAGCCATGGAGGAGGCGAGGATCTACTTCAGCGGAGACAAAGATGAAAAGAACCCAGAATCCAAGACCATCATCCTCAGCAGGCAAAACCCGGAGCTGGCGGCGTTGCCCACGCCCGAGTCGACGCCGGTGCTCCACCAAAAGGGGCTGCAGCCGAACAAGAGCCAGTGGGAAAAGGCACAAGGGAAAACGTGTGTGTCTCGGAAAGAGGCTCCGCCCAAAAGCCCACAAAACCCCAGCATCCCAAGTGCTGTCGTGCTTCCAAACGCAACGCACGAGAAAACCGTCCCGAGCAGCGACACTGGCAGCGTGAAGTCGGTCCATAAAGAGCGGCGGCGTTCCGTAGACGCTAGAAACACACTTAACGAGCTCCTGAAACATCTTAACGAGGCTAACGAGGCTGAGACAATAAACGCCAACCCTAAAGCCATCATGGCCGACACGCCACGCCCTCGCCCGCACCTGATGCTCGAGCCCATGGGGAACTTAGCAGAAATCCCACCCAAAGTTCCAAGTCGGGAAGCGTCACTTTATTCCCCGACATCCTATTCCCCGCCCTCATCCTACTCGGCTTCGTCCTATTCGCCGTCGTCCTCGTTACCCAGACACAGTCCCACCAAACGCGTGGACGTCCCGTCCGTGCCCACGTCACCCACCGGACAAATGGGGACCCTCGATAGGCAGCGTTTCCAGCGCGTCGGCTCCGCCCACCGCCATGCCGGATCATCCGGCGCTGTGGTGGTGCGTCACTCCAGTTTCAACCGAGGTGCGCTGGCTCCGCCCACACCGCCCTCCAGGATGGACTCGCAGGGCATCTCGAGGCAACACAGCTACAGCGGATACGGATCACTTCCTCGGACTTCTGTTAAACGAACGGCGTCGTTAAAGCCGGACGTTCCGCCCAAACCCGGAGGATTCGTACCGCAAACGAGGCCCGTAAACAAATACAGCTACTGAGCCGAGGACCAATCACGCACTCCGGAGAACGCAGGCCAACGATAAAAAGCTGTTTTGGCTCAGATGAGGACAGTAAAAGAAACATGGCTACTGAACGGAGTGGGAATTAAACGTAGTGAAGGCAGGAATACGGCCAGTTACTCCATAAACGAGTGAAATGACGGGATTTAACGAGGGCGGGGTTTGAGGAACTGTTCCAGGAGACACGGCGAGCGCAGGAAGTACGACAGAAACGTCTCCACGTGAAGCTGATCCTCTGCGAGACCGAGCGAGAAATGAAACTCTGCCGAGACGAACGGATCCGTGGGATGTTTACGTCACAAACGAGGGAAGTTTAAATGCCTATAAATCAGAAACAAAACGGTGGAACATTGAAAGAGCCAATGAGCAAAAACGTTGACCTGCGAGGCGGCAGGGACGTCTGAGGTCAAAGGTTAAAGGTCATGTGGGATTAACCTGTTGCAGGAATACTTGAAATATGTTTCTTGTTAACCAGCAtcgattaaaaataaatacgtAGGACTGAGGAAAAGCTGTGCATTCGACTGGAGGAATGATGCGAGGTGGTGACGTGTGTCATGGCGACGGGAAACGTTACGAATTTACGTAGTTACAACGTTCCACAAACGCTCCGAGGATGCACTTACAGCTGGCTTCTCTCCAGCTCCGGTTATTACTGTCCTAAAACTAAACCGTtaacattactgtgtgtgtgtgtgtgtgtgtgtgtgtttctgtgtgtgtgtgtgtttctgtgtgtgtgtgtgtgtgtgtgtgtgtccatgtgccTGCTCTgaactttttgttttatttttttaaactcactgGGAAACATTTCAATAATTTGCTGCTACTGAGTTTAGACGAACAatggtattgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgttcagccactgaacagcagtttattatttcattattcaatctgagaaacacactgaggtcgaatttttcatttataaaactcCTGAATTTCAGTAATTTAAATAATCGTAGTCGATCTGCGAGACGTCtgtagttttgcactggagctacgaggctaatgtagctaacacgTAGtggaagcttatagctaccaCTTTAGCATTGTGCTAAATAACTGCAtgtctaaaatgtctaaaacacACTCCGTGTTCTAATGAGCTGTTATATTAACCTCCAGATTTCCACCCAGACTCGGCCGTTACAGAATCTGAATGAATTTGCGCTTGTAATCACTGTAACAGCTACCGCTGTGTCCTAGCAACCAGTCATGCCGGTAATGACGACgactgtaaatatataaatatataaatacggACATTTCAGAGgcaagtgtgtgttctgtgcctTACCGAGAAACACTCGCTGTGGATTTTCATTTCCTTAAAATCATTGCACATTTAATCATGAGaagaatgaaaggaaaagagaaaaacaagaacgatgacaataataataataataataataataataaagaataattttGCCTGCAGAATGTATTGCATTTAATGTCGAGAATCGCCTTCACTCCGCTGTTTACGACTCGATGCCCAGAGACGACTTTATTCTGTTTAATTCTCTTAAAAATAACAAGTTGTTTCTTGTGTTTAAGATGCGTACGGCTGAAACGCTAGCTATAGCATTACCATTAGCCTGTTAGCGGGGGGTTTAATCCACAGCCAGGCGACGGAGAGGAAACATTAGCGGAGCattgattgtttttcttatGCTGCAGTTTCActgatttgttattaaaatgtttttgaacatgCTGCTCAGTGATTCATCTCTAAATCTAATCACACGTtcagattattatataacttaTATTTATGCAATTAAACGTCACATGGAGGAAAACCGGAGTGGTTGTGGAATAAACCCCACAGAAaccatgttagctagctagtgctAATCCTGCAGCTACGTGAGAAGTTTCGCTTTAGCGCATCCACACGGCTGACGTTCAGCTTCGTGATGTCGAGATAACGgtacaaaaaaacaatcatcaATACCTTGGATTTAAAtacaagattaaataaaaataaatttttgcaATTAAAGTTATTAACTAAAATCGTATTGCTGTAATTAACttgggaagaaaaaagaaagaaaaatccatcgttgttgttgttttgcatgTGTGTCTCTTTACAAAGGTGTTTAGGTctgatttgtttacatttgatTAGACGTGTGCCGATCATCACCTGAACGTTAATCTGATATAATCGCCGTATTACCGTGTGTTCAGAAGCTTTCAGAAGACGTGTGTCCTGATGTTCAGGGGCACAGACGCTAaaataagctccgcccccacgGCGatatcgtgtgtgtgtctgattttcGGCCACGCCTCCACCTGGTGATGTACGCGCTGTAGCTGTATTCGCATTCTAAACGTTCACACCGCAGTCACGTCCGTGCACAACAACAAACGCAACtcgttttattttaaatgctaagACTGTGCGGAAActggctgtttgtttgttttatgttttttttttttttttgttcctccaGAGTATTTTAACGTGTAGGTCTGTTGCGAAACCTGTACTGTGAAACTGTAAATAATTCCGTCACTGTTAACgatatttttgttgatttttttaacacagcatGTATagttgaaataaaatattactacaCTGAGACTCA

Function

symbol description
sema6d Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in retina. Orthologous to several human genes including SEMA6C (semaphorin 6C).

NR:

description
PREDICTED: semaphorin-6D isoform X1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06842 SEMA6; semaphorin 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU109967 False 982 TUCP 0.54 6 1627801 1644217
TU109968 False 805 TUCP 0.50 6 1628629 1648286
XM_034305322.1 True 5979 mRNA 0.49 18 1611811 1643871

Neighbor

gene id symbol gene type direction distance location
slc24a5 slc24a5,LOC108412301 coding downstream 25441 1566571 ~ 1586370 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding downstream 119784 1478928 ~ 1492027 (-)
dut dut,LOC102779749 coding downstream 142140 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 297156 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 377185 1227607 ~ 1234626 (-)
bcl2l10 NA coding upstream 216297 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 233545 1881831 ~ 1904411 (-)
myo5aa myo5a,myo5aa coding upstream 258232 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 339087 1987373 ~ 1992487 (-)
LOC113534648 LOC108264479 coding upstream 371571 2019857 ~ 2033455 (-)
G92489 NA non-coding downstream 45309 1565080 ~ 1566502 (-)
G92491 myef2 non-coding downstream 52630 1544532 ~ 1559181 (-)
LOC117597535 NA non-coding downstream 70599 1539030 ~ 1541212 (-)
G92488 NA non-coding downstream 101447 1492294 ~ 1510364 (-)
G92463 NA non-coding downstream 195307 1416082 ~ 1416504 (-)
G92512 NA non-coding upstream 13156 1661442 ~ 1661843 (-)
G92525 NA non-coding upstream 47893 1696179 ~ 1696444 (-)
G92540 NA non-coding upstream 155292 1803578 ~ 1803803 (-)
G92560 NA non-coding upstream 191973 1840259 ~ 1841222 (-)
G92576 NA non-coding upstream 211308 1859594 ~ 1859871 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 80749 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 319318 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 385460 1222721 ~ 1226351 (-)
G92340 NA other downstream 622755 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 764876 835116 ~ 846935 (-)
G92531 NA other upstream 120119 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 346745 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 387655 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 443448 2091734 ~ 2109935 (-)
G93046 NA other upstream 1101102 2749388 ~ 2751169 (-)

Expression


Co-expression Network