G92576


Basic Information

Item Value
gene id G92576
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1859594 ~ 1859871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU110057
gtgtgtgtgtgtgtgtgtgtgtattttgctttaattttattGTCCTTGTGGGGAAACTTGGCTGCTTCAAATAAATTGATTTctctacaaaaaaatacaacttttCTTAGAACAActatattttacttttcagtGCTGACTAGAGCTGTATGTAGGCTTGGAGAATGGTTGAAGTTATGTTTAGGTTGCAATTGGGCTAAGAGTTTTATTGGACAAGGGATACGATTGGCCTATTGTTAGGGTTGAGCTAGGGTTACTGTTTAGATATGGTTAGGGTT

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU110057 True 278 lncRNA 0.36 1 1859594 1859871

Neighbor

gene id symbol gene type direction distance location
slc24a5 slc24a5,LOC108412301 coding downstream 273224 1566571 ~ 1586370 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding downstream 367567 1478928 ~ 1492027 (-)
dut dut,LOC102779749 coding downstream 389923 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 544939 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 624968 1227607 ~ 1234626 (-)
bcl2l10 NA coding upstream 4712 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 21960 1881831 ~ 1904411 (-)
myo5aa myo5a,myo5aa coding upstream 46647 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 127502 1987373 ~ 1992487 (-)
LOC113534648 LOC108264479 coding upstream 159986 2019857 ~ 2033455 (-)
G92560 NA non-coding downstream 18372 1840259 ~ 1841222 (-)
G92540 NA non-coding downstream 55791 1803578 ~ 1803803 (-)
G92525 NA non-coding downstream 163150 1696179 ~ 1696444 (-)
G92512 NA non-coding downstream 197751 1661442 ~ 1661843 (-)
G92510 NA non-coding downstream 216649 1640689 ~ 1642945 (-)
G92592 NA non-coding upstream 2078 1861949 ~ 1862414 (-)
LOC117597531 NA non-coding upstream 17094 1876965 ~ 1880573 (-)
LOC117597579 NA non-coding upstream 312003 2171874 ~ 2173454 (-)
G92763 NA non-coding upstream 364313 2224184 ~ 2224457 (-)
LOC117597578 NA non-coding upstream 380567 2240438 ~ 2260923 (-)
G92531 NA other downstream 90799 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 211308 1611811 ~ 1648286 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 328532 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 567101 1197135 ~ 1292493 (-)
LOC113534649 LOC108264477 other upstream 135160 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 176070 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 231863 2091734 ~ 2109935 (-)
G93046 NA other upstream 889517 2749388 ~ 2751169 (-)
G93047 NA other upstream 899741 2759612 ~ 2768298 (-)

Expression


Co-expression Network