G93380


Basic Information

Item Value
gene id G93380
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3366721 ~ 3367195 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU111001
taaattttttattatagtttGCAAATTAGTGATGATTAAATAAGGGGAAAAATCCATAAAGCCCCTCAGGTGAGTGCACTTCCTGTACGACTGGAAGTTACTGTCAGCAGAGATGTGTCGTACTGTTGATATTACACAGCGTGAGGATCGATTGTAACATAAGTATATGTTTATGTGTTACAAGTGTCTGATTAGAGTGATCTAGATCGGACATTTCCAGGTTCagttccaatttttttttccaaataaattaaaaaagtcacAAACTTCTCAGTTCACTTACACACCAACTTATCACTCTGATTTTCTAATTCTGTATTAATATGGCTTAAATTTAACTTCCTGttaaaaagagtttaaaaaaatgttaacacagtgttaacttttgactggcagtgtgtattatataatgtatttatattttacatacacacacacacacatacagtatatacatatagtgtatattgaaAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111001 True 475 lncRNA 0.31 1 3366721 3367195

Neighbor

gene id symbol gene type direction distance location
lekr1 LOC108264582,LOC108264140 coding downstream 75485 3243210 ~ 3291236 (-)
ptx3a ptx3 coding downstream 237332 3123317 ~ 3129389 (-)
LOC113534302 LOC108264856,LOC108432364 coding downstream 298420 3064670 ~ 3068301 (-)
LOC113534536 LOC108264856,LOC108432364 coding downstream 305226 3056704 ~ 3061495 (-)
LOC113534544 LOC108264856 coding downstream 313526 3048260 ~ 3053195 (-)
tiparp tiparp,LOC107711769,LOC107566587,LOC107745418,LOC107570705 coding upstream 206 3367401 ~ 3398528 (-)
LOC113534786 LOC108264139,LOC108437982 coding upstream 182886 3550081 ~ 3559163 (-)
gmps gmps coding upstream 195131 3562326 ~ 3584100 (-)
LOC113534660 LOC108263992,LOC108263974,LOC108437989,LOC108434102,LOC108437987 coding upstream 398734 3765929 ~ 3771200 (-)
LOC113534571 LOC108264136,LOC108264184,LOC108264127,LOC108264128,LOC108264116,LOC108264183,LOC108264134 coding upstream 413185 3780380 ~ 3783481 (-)
G93339 NA non-coding downstream 131069 3227269 ~ 3235652 (-)
G93353 NA non-coding downstream 151256 3215259 ~ 3215465 (-)
G93350 NA non-coding downstream 154598 3211868 ~ 3212123 (-)
G93349 NA non-coding downstream 154917 3211591 ~ 3211804 (-)
G93342 NA non-coding downstream 166020 3199386 ~ 3200701 (-)
LOC117597513 NA non-coding upstream 38950 3406145 ~ 3422158 (-)
G93505 NA non-coding upstream 57828 3425023 ~ 3454371 (-)
G93557 NA non-coding upstream 211822 3579017 ~ 3581206 (-)
G93639 NA non-coding upstream 367902 3735097 ~ 3735392 (-)
LOC113534402 NA non-coding upstream 577792 3944987 ~ 3946376 (-)
G93047 NA other downstream 598423 2759612 ~ 2768298 (-)
G93046 NA other downstream 615552 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1235931 2035941 ~ 2130790 (-)
onecut1 onecut1 other downstream 1256786 2091734 ~ 2109935 (-)
LOC113534649 LOC108264477 other downstream 1351756 1995031 ~ 2014965 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 58523 3425718 ~ 3548751 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 703605 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 806093 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 849823 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 2272501 5639696 ~ 5642949 (-)

Expression


Co-expression Network