G93350


Basic Information

Item Value
gene id G93350
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3211868 ~ 3212123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU110964
atgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgcaccccagacctcctcaccaacatcagcgcctgatctcactaatgctcttgtagctgaatgaacacaaatccccacagccacactccaacatctagtggaaagacttcacagaagagtggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110964 True 256 lncRNA 0.52 1 3211868 3212123

Neighbor

gene id symbol gene type direction distance location
ptx3a ptx3 coding downstream 82479 3123317 ~ 3129389 (-)
LOC113534302 LOC108264856,LOC108432364 coding downstream 143567 3064670 ~ 3068301 (-)
LOC113534536 LOC108264856,LOC108432364 coding downstream 150373 3056704 ~ 3061495 (-)
LOC113534544 LOC108264856 coding downstream 158673 3048260 ~ 3053195 (-)
pepd pepd coding downstream 350909 2799623 ~ 2860959 (-)
lekr1 LOC108264582,LOC108264140 coding upstream 31087 3243210 ~ 3291236 (-)
tiparp tiparp,LOC107711769,LOC107566587,LOC107745418,LOC107570705 coding upstream 155278 3367401 ~ 3398528 (-)
LOC113534786 LOC108264139,LOC108437982 coding upstream 337958 3550081 ~ 3559163 (-)
gmps gmps coding upstream 350203 3562326 ~ 3584100 (-)
LOC113534660 LOC108263992,LOC108263974,LOC108437989,LOC108434102,LOC108437987 coding upstream 553806 3765929 ~ 3771200 (-)
G93349 NA non-coding downstream 64 3211591 ~ 3211804 (-)
G93342 NA non-coding downstream 11167 3199386 ~ 3200701 (-)
G93231 NA non-coding downstream 116929 3094708 ~ 3094939 (-)
LOC113534492 NA non-coding downstream 293046 2906327 ~ 2918822 (-)
G93036 NA non-coding downstream 573867 2637007 ~ 2638001 (-)
G93353 NA non-coding upstream 3136 3215259 ~ 3215465 (-)
G93339 NA non-coding upstream 15146 3227269 ~ 3235652 (-)
G93380 NA non-coding upstream 154598 3366721 ~ 3367195 (-)
LOC117597513 NA non-coding upstream 194022 3406145 ~ 3422158 (-)
G93505 NA non-coding upstream 212900 3425023 ~ 3454371 (-)
G93047 NA other downstream 443570 2759612 ~ 2768298 (-)
G93046 NA other downstream 460699 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1081078 2035941 ~ 2130790 (-)
onecut1 onecut1 other downstream 1101933 2091734 ~ 2109935 (-)
LOC113534649 LOC108264477 other downstream 1196903 1995031 ~ 2014965 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 213595 3425718 ~ 3548751 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 858677 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 961165 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 1004895 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 2427573 5639696 ~ 5642949 (-)

Expression


Co-expression Network