G93036


Basic Information

Item Value
gene id G93036
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2637007 ~ 2638001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU110609
gctcCCTATTaaacatagtgcactatatagggtgtACAGTCCATTATGTCGTACCCTAGGTAGGGCAGTTATATAAGGAGTAGGGAGCTGAATTCAAAATGGCTCCCTATTaaacatagtgcactacatagggtgtacgGTCCATTACGTCGTACCCTAGGTAGGGCAGTTATATAAGGAGTAGGGAGCTGAATTCAAAATGGCTCCCTATTaaacatagtgcactacatagggtgtacgGTCCATTACGTTGTACCCTAGGTAGGGCAGTTACAgctgaggtcaaaagtttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110609 True 294 lncRNA 0.44 3 2637007 2638001

Neighbor

gene id symbol gene type direction distance location
rab27a rab27a,LOC106562223,LOC106587426 coding downstream 13182 2599541 ~ 2623825 (-)
LOC113534648 LOC108264479 coding downstream 603552 2019857 ~ 2033455 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding downstream 644520 1987373 ~ 1992487 (-)
myo5aa myo5a,myo5aa coding downstream 652674 1906518 ~ 1984333 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding downstream 732596 1881831 ~ 1904411 (-)
ccpg1 ccpg1 coding upstream 1863 2639864 ~ 2656507 (-)
dnaaf4 dyx1c1 coding upstream 21702 2659703 ~ 2670869 (-)
pygo1 pygo1 coding upstream 32949 2670950 ~ 2674690 (-)
prtga prtg coding upstream 43279 2681280 ~ 2722022 (-)
nedd4a nedd4,LOC107659054,LOC106562216 coding upstream 91212 2729213 ~ 2778102 (-)
G93028 NA non-coding downstream 10284 2625924 ~ 2626723 (-)
G93023 NA non-coding downstream 30629 2587586 ~ 2606378 (-)
G92782 NA non-coding downstream 334577 2302106 ~ 2302430 (-)
LOC117597578 NA non-coding downstream 376084 2240438 ~ 2260923 (-)
G92763 NA non-coding downstream 412550 2224184 ~ 2224457 (-)
LOC113534492 NA non-coding upstream 268326 2906327 ~ 2918822 (-)
G93231 NA non-coding upstream 456707 3094708 ~ 3094939 (-)
G93342 NA non-coding upstream 561385 3199386 ~ 3200701 (-)
G93349 NA non-coding upstream 573590 3211591 ~ 3211804 (-)
G93350 NA non-coding upstream 573867 3211868 ~ 3212123 (-)
fam214a fam214a other downstream 506217 2035941 ~ 2130790 (-)
onecut1 onecut1 other downstream 527072 2091734 ~ 2109935 (-)
LOC113534649 LOC108264477 other downstream 622042 1995031 ~ 2014965 (-)
G92531 NA other downstream 868212 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 988721 1611811 ~ 1648286 (-)
G93046 NA other upstream 111387 2749388 ~ 2751169 (-)
G93047 NA other upstream 121611 2759612 ~ 2768298 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 787717 3425718 ~ 3548751 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 1432799 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 1535287 4173288 ~ 4173594 (-)

Expression


Co-expression Network