rab27a (rab27a,LOC106562223,LOC106587426)


Basic Information

Item Value
gene id rab27a
gene name rab27a,LOC106562223,LOC106587426
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2599541 ~ 2623825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927364.2
TGCTGCTTCACTTCGCAAACATTtccagccgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagctttaaGGAAATTCGTGCAATAACCTAAAGTTAGTCTAAAACTCAGTCTAAAGTTTTTATTGtcggttttttttatttctggacgcatttgtttatttctggtCAGTAATTCTCCTCTCCATTAAGGTTATCCACCTGgttcaGCAAGCAGCCCTCACTATGTCTGATGGGGACTACGATTACCTCATCAAGTTCCTAGCCCTGGGGGATTCTGGGGTGGGAAAAACCAGCTTCCTGTACCAGTACACGGACGGCAAGTTCAACTCCAAATTCATCACCACAGTGGGGATAGACTTCAGAGAAAAGCGAGTGGTGTACAAGTCCAATGGGCCTGATGGTGCAGCGGGGCGAGGCCAAAGGATACACATCCAGCTGTGGGACACGGCCGGCCAAGAGAGGTTCAGGAGTCTGACGACGGCCTTCTTCAGAGATGCGATGGGTTTCCTGTTGCTGTTCGATCTGACGAACGAGCAGAGCTTCCTCAACGTCAGGAACTGGATGAgTCAGCTGCAGATGCACGCGTACTGTGAGAACCCTGACATCGTGCTGTGTGGGAACAAGTGTGACCTGGAGGACCAGCGATTCGTTAACGAGGAGGAGGCTCGAGAGCTCGCCACTAAATACGGGATCCCGTACTTCGAGACGAGCGCGGCGAACGGCGAGAACGTGGCCCAGGCCGTGGAGGTCCTGCTGGATCTGATCATGAAGCGCATGGAGAGGTGTGTGGACCGATCGTGGATCCCTGACGGCACCATGCGCTCTAACGGGCACAGTGGGAGCGAGCTGGTCGAACCGCCAACACAGGAGAAGAGCAAGTGCGCCTGCTAGTGGCCAAACGGTGCCACTGCGCCATCTTATTATTGAAACGTCCACTTAGATTAGCACATGAAACAAGAGCGAGAGTGGCCACTAGTGGCCAAACAGTGCCATTACATCTTCTTATACTGTTATTGAACATCTGGCTGGATTTCATCTTTACACTTTATACAGTAATCAGGCCTGAGGTTTTCCAAAAACAATTACAGTAGAGGTTTGTACCagtagtaataaaatataaatataacttgGATTTTACATAAATAACGATATTATTCTTTAAAGTTGGGTTAATACAGACCACTAGATACAAGTTCTTGTGCTCTGACCCAGAAATCTCAAACCAGTGCCACTCGATAAAATGTCCCAAGTGTGTCAGATAACTGCTGGTCTCTCGGGTGAAGCCAGTCATCTTCCTTGACCTGTGCTTGTTAATGACTTCTGTACATTGCCCCCTTTTTGgatttcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatttttctcactAGCTATAATGGATTGTGGATTGGACTGGGAGGGGTTACACAGAGAaaatctgcatgtgtgtgtgtcacctttTTATCGGATTGATGAAAATAAGGATAAATGTGTTGAAAAAAGTTTCGAGAAGATTGCGAAGATTGATCCTAGGAATAATTAATAAAGGAATAATTTAGATACACACTGTTCCCTCATGCCATGAATATTTagtaatggaagtctatctcaaaacacaaaaatcttTGGTGTAAATGTCAACcttaagccacacccacttcttCAGTGATACGGGACACAGAAGGACTTGAGGCGTACGTAATGCAGAGACGACGTGACCATCTTCATGAGCTTACAAGTTACAAGTTTGCATACTCTGTGCGGTTTCGTATTGGTCGTCACGTATGAGTTCTCCAGTACAGCAGGTGGCGCTGTTAAAACCTCATGACTGTTTCCACGACTACAGGAAGACGATTGGCGCTATGCAAAGTCATCTCGGAAGTAATCGGCTCGGATACGCTTGGTACGTAGTGACCATGTAGCGTTTTCATCCGCAGAGTTCTGTCGCCTTCGTATGATGTCATTTAGCTCTGTAATTATGCCACATTGTTTGTGGAAGCTAGCCAAACATCATCTAAGCATGAGATATGCTAAAGCGTTTAGTGCCATCTGTAGACATTAACAAAACTTCGTAGTGTAGCTGAACACTAGAACGTTCCAtaggcagccatcttggaatCGCTTTTAATCTCAGCTCGGTTTGGGATCGTTACGCCTCTCTAGGCTCCGCCCCCGACTGTTTGAAGGTGTAGTTGTTGAGCTTCATGTGAATATCATATGCAGTAAGTGCACATGCTTATGGAAAGATTTTCAGTGAAATAGACTTCCATTACTAGCAAACATGTCAcgtttgattttgattttccTTTAATGCTAAATCTTGGCTCAGTCGTCGCCTGAAAGTCGCCTTAAGTTGGGGGTTAAATTGTGATTGTTGAGGAAACTtcattctttattcattttactgCATTTCAGTTCTTTTACATTGATGTAATACTGTACACTGTTTTCAATTTAGTTATCTCACCGTCTCAGCGGAAATGATATTGTACGATATTTTCCACGTTGCGAATTATGGTATATCACCAGGAAATTCCTGCAGTGCTGCATGTAAACTGCTGTGACAGACTTTCATTACAGTTTGAATTATAttcttgtagtagtgtagtCCAGGGCACATGAAATGATTTGAGATTAGATGATTGACTTGTAGGCTACGTCACGTGCAATGATGCATCTTTCTTTGGCGCTTGTTGttctttgtattattattattattattatttttttgtgatcCAACACGTCCCATCGCTAATCACAGATTAAATCAGGAGTTCAGACCCGAGAGAAAACACATGTGAGGAACGCTGACTTGCTATACATTTCACTTTACCTCTGAATGAATGTTCATAATGTTTTATGACTCAGACCTGCCAATACGACCTAGCGTGTGTCATTAGCTTTTAGATCTTATATCTGTTTAAATataagtggagaaaatgaaagtgtgtgtgaatgttaatGCATTACAGCCCATTAACACCAACTCTTTGGTGCACTAAGATTTAGTACGCAATTCACACCGAAAGTGCCTAACCTAATGTATAGTCTTTAACACTGCATCCATGCCAAACACTGTCTCTATGCCAAAcctttttcagaaaataaatatattttattatttattaaaatggctTCACAAAGCA

Function

symbol description
rab27a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in melanosome transport and positive regulation of exocytosis. Predicted to be located in late endosome and membrane. Predicted to be active in melanosome and secretory granule. Is expressed in cloaca; nervous system; and pronephric tubule. Human ortholog(s) of this gene implicated in Griscelli syndrome type 2 and non-Langerhans-cell histiocytosis. Orthologous to human RAB27A (RAB27A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-27A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07885 RAB27A; Ras-related protein Rab-27A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927364.2 True 3164 mRNA 0.43 6 2599541 2623825

Neighbor

gene id symbol gene type direction distance location
LOC113534648 LOC108264479 coding downstream 566086 2019857 ~ 2033455 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding downstream 607054 1987373 ~ 1992487 (-)
myo5aa myo5a,myo5aa coding downstream 615208 1906518 ~ 1984333 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding downstream 695130 1881831 ~ 1904411 (-)
bcl2l10 NA coding downstream 723496 1864583 ~ 1876045 (-)
ccpg1 ccpg1 coding upstream 16039 2639864 ~ 2656507 (-)
dnaaf4 dyx1c1 coding upstream 35878 2659703 ~ 2670869 (-)
pygo1 pygo1 coding upstream 47125 2670950 ~ 2674690 (-)
prtga prtg coding upstream 57455 2681280 ~ 2722022 (-)
nedd4a nedd4,LOC107659054,LOC106562216 coding upstream 105388 2729213 ~ 2778102 (-)
G92782 NA non-coding downstream 297111 2302106 ~ 2302430 (-)
LOC117597578 NA non-coding downstream 338618 2240438 ~ 2260923 (-)
G92763 NA non-coding downstream 375084 2224184 ~ 2224457 (-)
LOC117597579 NA non-coding downstream 426087 2171874 ~ 2173454 (-)
LOC117597531 NA non-coding downstream 718968 1876965 ~ 1880573 (-)
G93028 NA non-coding upstream 2099 2625924 ~ 2626723 (-)
G93036 NA non-coding upstream 13182 2637007 ~ 2638001 (-)
LOC113534492 NA non-coding upstream 282502 2906327 ~ 2918822 (-)
G93231 NA non-coding upstream 470883 3094708 ~ 3094939 (-)
G93342 NA non-coding upstream 575561 3199386 ~ 3200701 (-)
fam214a fam214a other downstream 468751 2035941 ~ 2130790 (-)
onecut1 onecut1 other downstream 489606 2091734 ~ 2109935 (-)
LOC113534649 LOC108264477 other downstream 584576 1995031 ~ 2014965 (-)
G92531 NA other downstream 830746 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 951255 1611811 ~ 1648286 (-)
G93046 NA other upstream 125563 2749388 ~ 2751169 (-)
G93047 NA other upstream 135787 2759612 ~ 2768298 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 801893 3425718 ~ 3548751 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 1446975 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 1549463 4173288 ~ 4173594 (-)

Expression


Co-expression Network