LOC113534347


Basic Information

Item Value
gene id LOC113534347
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13782775 ~ 13784737 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117539
GTCTCTCTGTCTTGACTGATGCCGAGTAGTTAGCGTCTCGTTCGGAAAGTTGTTGCTGCTTAAAAACGTGCATATTGATGCCTCTAACTACCTGCAGAGCAGCAGAGATGATTGCAAGGGTTTTGTCCACTGAGTCTAATGAAGACTGCTTTCTTGCAAGCCTTCAGCAAAGTCCTGGGTGACAATTTGATCATGCTACTCTGCCCTGATTAAAGAAACTGAATGTTGGTGTAGTAATCCTGATCTGTATGGATGGTGTGTGGCACCTGGTGCAAGCCTTCCACCTTCAAGCTGGACTACTAGGCATCTTGTACATCATGTGTAATGGATCCGGACGTGATCTTGAAGAGTGACAAGAAGGAGTCAAGTTTGGGGAGAGAATTTCAAGAGGACTCTGGGGGGTGGGGGACAAGAGGAAATGGACACCAGCTCCAAGACCTGTATGATCAAGGCTAAGATGCTGAAGCACAGAAGTTTAGTCCAAGATCTCCACCAGTTCCTGCAACAGAAGGGCTTCATTCACATATTGCTACTTATCTAGTTTCAGCCAATAAAAAACTGCAAAT
>XR_003403491.2
GTTTTCCTCCTTATATAAACCCTTGTGAGGGCTGTTGTCGGTCTCTCTGTCTTGACTGATGCCGAGTAGTTAGCGTCTCGTTCGGAAAGTTGTTGCTGCTTAAAAACGTGCATATTGATGCCTCTAACTACCTGCAGAGCAGCAGAGATGATTGCAAGGGTTTTGTCCACTGAGTCTAATGAAGACTGCTTTCTTGCAAGCCTTCAGCAAAGTCCTGGGTGACAATTTGATCATGCTACTCTGCCCTGATTAAAGAAACTGAATGTTGGTGTAGTAATCCTGATCTGTATGGATGGTGTGTGGCACCTGGTGCAAGCCTTCCACCTTCAAGCTGGACTACTAGGCATCTTGTACATCATGTGTAATGGATCCGGACGTGATCTTGAAGAGTGACAAGAAGGAGTCAAGTTTGGGGAGAGAATTTCAAGAGGACTCTGGGGGGTGGGGGACAAGAGGAAATGGACACCAGCTCCAAGACCTGTATGATCAAGGCTAAGATGCTGAAGCACAGAAGTTTAGTCCAAGATCTCCACCAGTTCCTGCAACAGAAGGGCTTCATTCACATATTGCTACTTATCTAGTTTCAGCCAATAAAAAACTGCAAATAACTTTACCTTGGTGTA
>XR_003403492.2
GAGTAGTTAGCGTCTCGTTCGGAAAGTTGTTGCTGCTTAAAAACGTGGCCTTTCCTACTGGCACAGTGCAAGTGATCAAGCTggaaaagatgaatgaaattttgCATATTGATGCCTCTAACTACCTGCAGAGCAGCAGAGATGATTGCAAGGGTTTTGTCCACTGAGTCTAATGAAGACTGCTTTCTTGCAAGCCTTCAGCAAAGTCCTGGGTGACAATTTGATCATGCTACTCTGCCCTGATTAAAGAAACTGAATGTTGGTGTAGTAATCCTGATCTGTATGGATGGTGTGTGGCACCTGGTGCAAGCCTTCCACCTTCAAGCTGGACTACTAGGCATCTTGTACATCATGTGTAATGGATCCGGACGTGATCTTGAAGAGTGACAAGAAGGAGTCAAGTTTGGGGAGAGAATTTCAAGAGGACTCTGGGGGGTGGGGGACAAGAGGAAATGGACACCAGCTCCAAGACCTGTATGATCAAGGCTAAGATGCTGAAGCACAGAAGTTTAGTCCAAGATCTCCACCAGTTCCTGCAACAGAAGGGCTTCATTCACATATTGCTACTTATCTAGTTTCAGCCAATAAAAAACTGCAAATAACTTTACCTTGGTGTA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU117539 False 566 lncRNA 0.46 6 13782792 13784697
XR_003403491.2 True 623 lncRNA 0.45 6 13782775 13784737
XR_003403492.2 False 617 lncRNA 0.45 7 13782775 13784674

Neighbor

gene id symbol gene type direction distance location
megf11 megf11,LOC107596974,LOC107686294,LOC107672222 coding downstream 19319 13652058 ~ 13763456 (-)
trnaq-cug_10 NA coding downstream 137295 13645409 ~ 13645480 (-)
dennd4a dennd4a coding downstream 139203 13612796 ~ 13643572 (-)
ints14 vwa9,LOC107583765,LOC107596981 coding downstream 193791 13582928 ~ 13588984 (-)
ppcdc ppcdc,LOC107583771,LOC107742893,LOC107686355,LOC107738727,LOC107672202 coding downstream 206958 13571853 ~ 13575817 (-)
rpl4 rpl4,LOC107718306 coding upstream 1410 13786147 ~ 13789542 (-)
LOC113534851 NA coding upstream 2041 13786778 ~ 13786848 (-)
LOC113534850 NA coding upstream 2397 13787134 ~ 13787202 (-)
LOC113534844 NA coding upstream 2920 13787657 ~ 13787786 (-)
LOC113534840 NA coding upstream 3365 13788102 ~ 13788199 (-)
G99134 NA non-coding downstream 14305 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding downstream 17719 13764926 ~ 13765056 (-)
G99118 LOC108280567 non-coding downstream 134989 13645575 ~ 13647786 (-)
LOC117597528 NA non-coding downstream 464767 13311395 ~ 13318008 (-)
G98790 NA non-coding downstream 600225 13182343 ~ 13182550 (-)
G99165 NA non-coding upstream 58082 13842819 ~ 13843229 (-)
G99166 NA non-coding upstream 59262 13843999 ~ 13844237 (-)
G99184 LOC101268919,LOC101159109 non-coding upstream 147816 13932553 ~ 13932934 (-)
G99188 smad3,LOC108264458,LOC107686302,LOC108424035 non-coding upstream 160014 13944751 ~ 13946911 (-)
G99187 smad3b,smad3,LOC108264458,LOC107738715,LOC108424035,LOC107686302,LOC107672260 non-coding upstream 165410 13950147 ~ 13950721 (-)
c6h15orf39 c4h15orf39 other downstream 220201 13550680 ~ 13562574 (-)
G98770 NA other downstream 730464 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1358797 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1377494 12396507 ~ 12405281 (-)
admb NA other downstream 1437323 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 551199 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1562429 15347166 ~ 15357563 (-)
G101178 NA other upstream 4402710 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6195332 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6611129 20395866 ~ 20416574 (-)

Expression


Co-expression Network