G99166


Basic Information

Item Value
gene id G99166
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13843999 ~ 13844237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117569
gccatatagtgtaagtctAAACCCACTCAAAACAAACTGCTGGACTGTAAGTTGTTGACTAGATGACTGGATGTTATGtctattacagggttactctaaaaattcagcagatagtagcctatagcataagtcaagtgtgaaagcctctcaacttaattttgtttttagtgtgtgtggtgttattAACGTTGTcttgccccaccaaaatctatggtcatgagccaTTGCTGAGATTTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117569 True 239 lncRNA 0.38 1 13843999 13844237

Neighbor

gene id symbol gene type direction distance location
snapc5 snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772 coding downstream 34006 13806984 ~ 13809993 (-)
lctlb lctl coding downstream 38825 13797624 ~ 13805174 (-)
LOC113534839 NA coding downstream 55152 13788751 ~ 13788847 (-)
LOC113534840 NA coding downstream 55800 13788102 ~ 13788199 (-)
LOC113534844 NA coding downstream 56213 13787657 ~ 13787786 (-)
aagab aagab coding upstream 112196 13956433 ~ 13961386 (-)
kif23 kif23,LOC107672274,LOC107686310 coding upstream 412310 14256547 ~ 14265263 (-)
paqr5a paqr5,LOC108263988 coding upstream 421847 14266084 ~ 14276651 (-)
LOC113534338 NA coding upstream 444788 14289025 ~ 14294440 (-)
ighmbp2 ighmbp2 coding upstream 471598 14315835 ~ 14324438 (-)
G99165 NA non-coding downstream 770 13842819 ~ 13843229 (-)
LOC113534347 NA non-coding downstream 59262 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding downstream 60375 13783555 ~ 13783624 (-)
G99134 NA non-coding downstream 75529 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding downstream 78943 13764926 ~ 13765056 (-)
G99184 LOC101268919,LOC101159109 non-coding upstream 88316 13932553 ~ 13932934 (-)
G99188 smad3,LOC108264458,LOC107686302,LOC108424035 non-coding upstream 100514 13944751 ~ 13946911 (-)
G99187 smad3b,smad3,LOC108264458,LOC107738715,LOC108424035,LOC107686302,LOC107672260 non-coding upstream 105910 13950147 ~ 13950721 (-)
G99202 NA non-coding upstream 191030 14035267 ~ 14035541 (-)
G99396 NA non-coding upstream 435206 14279443 ~ 14630745 (-)
c6h15orf39 c4h15orf39 other downstream 281425 13550680 ~ 13562574 (-)
G98770 NA other downstream 791688 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1420021 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1438718 12396507 ~ 12405281 (-)
admb NA other downstream 1498547 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 491699 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1502929 15347166 ~ 15357563 (-)
G101178 NA other upstream 4343210 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6135832 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6551629 20395866 ~ 20416574 (-)

Expression


Co-expression Network