snapc5 (snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772)


Basic Information

Item Value
gene id snapc5
gene name snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13806984 ~ 13809993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927443.2
ctcTTTGCAAATGGCGTAACTGTATTTTATCCTTTCAGTATTGTGTATtcactaaaatgttttaaaacagtATCTCCAGAACATTTccagctgtcttttttttttctgctgaactCTGCGCGCGTGCCTGTGAGCGCGTGCCCGCGACAGAACGTTGCACGTGACTGTTCTCACGAAAGACTACATGGACAAACACAGAGCATCATCTCACCATTATGCCTGTTCTACACGCTGAAATAACATAGAGAATGCTATAAATCCACTCCTCCATCATGCTGAGTCGCTTGCAGGAGCTCAAGAAAGAAGAGGAGACTCTTCTGAAGATCAAAGTCATGCTGCAAGATCAGCTTAACAGGCTCAAGTTTGAAGAGGGAGCGCTGAAGTCCATGATCAATGCTCAGTCTGAGGAGAGCCCAACTGATCCTGCTCCTCCTGAGGCTGAGGTCAACCCAGACAATGAGAGCGAGATCAATCAGACTAAGCTAATACTAGGTGCTCCCACTGACTATGaaatggaggaggaggaagaggaggaagatgatgatgacgatgaagaGGATGATCTTGACATGGTGCTtgaggaggaggaagacgaTGATGACTACTGAGTTTACATTCAGTTAGCACATGTGAACTGTCTATGACTATCAGTTAGGTGTGTAATGAGCAAAATGGCATGCCAAAAGATGTGTGTTAATAggttgtttctgtttctctttttgtctgcaGATGATGCTATAATTTATTAACTATAGGTAAAAGACAACTTGAGATCAAACCACAAAATGGTGTGTAGCAACTAGCAAGCATAGAAGCTCAGACATCTTTTTGGTACTGTATATGAGGCTAAGCCTACACTGTTGTCACTTTTGTAAATGTAAGCCTGCTCCATTAttgtatttcattcattctgttGAAAAATGACATGTAGCCGATGTTTCAGATGACAGTACATCCAGGTTGAATGTACTTATATGTGTTGACTTCAAAGCATTTGTATTTGAGAGTTGCCAGAGatactttttaaatgtaatttgagagacagactgaatgcatgtgtgtatgtaatgcaTGTGCATGGGTCATTTCTTGATGAGCCAGTACTGTACAGTGATGTCCTTTTGTACTCCATGAGGAATATTGTATATGTTTagtacagtggtttaaattacttaAGCACAATACAGAAGTTGGAATCCCT
>XM_034305074.1
gcctcTTTGCAAATGGCGTAACTGTATTTTATCCTTTCAGTATTGTGTATtcactaaaatgttttaaaacagtATCTCCAGAACATTTccagctgtcttttttttttctgctgaactCTGCGCGCGTGCCTGTGAGCGCGTGCCCGCGACAGAACGTTGCACGTGACTGTTCTCACGAAAGACTACATGGACAAACACAGAGCATCATCTCACCATTATGCCTGTTCTACACGCTGAAATAACATAGATAAGGGAGCAGTCTTGTGCTTATTGTAGTCTGATGTGCAGGAATGCTATAAATCCACTCCTCCATCATGCTGAGTCGCTTGCAGGAGCTCAAGAAAGAAGAGGAGACTCTTCTGAAGATCAAAGTCATGCTGCAAGATCAGCTTAACAGGCTCAAGTTTGAAGAGGGAGCGCTGAAGTCCATGATCAATGCTCAGTCTGAGGAGAGCCCAACTGATCCTGCTCCTCCTGAGGCTGAGGTCAACCCAGACAATGAGAGCGAGATCAATCAGACTAAGCTAATACTAGGTGCTCCCACTGACTATGaaatggaggaggaggaagaggaggaagatgatgatgacgatgaagaGGATGATCTTGACATGGTGCTtgaggaggaggaagacgaTGATGACTACTGAGTTTACATTCAGTTAGCACATGTGAACTGTCTATGACTATCAGTTAGGTGTGTAATGAGCAAAATGGCATGCCAAAAGATGTGTGTTAATAggttgtttctgtttctctttttgtctgcaGATGATGCTATAATTTATTAACTATAGGTAAAAGACAACTTGAGATCAAACCACAAAATGGTGTGTAGCAACTAGCAAGCATAGAAGCTCAGACATCTTTTTGGTACTGTATATGAGGCTAAGCCTACACTGTTGTCACTTTTGTAAATGTAAGCCTGCTCCATTAttgtatttcattcattctgttGAAAAATGACATGTAGCCGATGTTTCAGATGACAGTACATCCAGGTTGAATGTACTTATATGTGTTGACTTCAAAGCATTTGTATTTGAGAGTTGCCAGAGatactttttaaatgtaatttgagagacagactgaatgcatgtgtgtatgtaatgcaTGTGCATGGGTCATTTCTTGATGAGCCAGTACTGTACAGTGATGTCCTTTTGTACTCCATGAGGAATATTGTATATGTTTagtacagtggtttaaattacttaAGCACAATACAGAAGTTGGAATCCCT

Function

symbol description
snapc5 Predicted to act upstream of or within transcription by RNA polymerase II and transcription initiation from RNA polymerase III promoter. Predicted to be located in nucleus. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5).

NR:

description
PREDICTED: snRNA-activating protein complex subunit 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927443.2 False 1201 mRNA 0.41 4 13806984 13809991
XM_034305074.1 True 1243 mRNA 0.41 4 13806984 13809993

Neighbor

gene id symbol gene type direction distance location
lctlb lctl coding downstream 1810 13797624 ~ 13805174 (-)
rpl4 rpl4,LOC107718306 coding downstream 17442 13786147 ~ 13789542 (-)
LOC113534839 NA coding downstream 18137 13788751 ~ 13788847 (-)
LOC113534840 NA coding downstream 18785 13788102 ~ 13788199 (-)
LOC113534844 NA coding downstream 19198 13787657 ~ 13787786 (-)
aagab aagab coding upstream 146440 13956433 ~ 13961386 (-)
kif23 kif23,LOC107672274,LOC107686310 coding upstream 446554 14256547 ~ 14265263 (-)
paqr5a paqr5,LOC108263988 coding upstream 456091 14266084 ~ 14276651 (-)
LOC113534338 NA coding upstream 479032 14289025 ~ 14294440 (-)
ighmbp2 ighmbp2 coding upstream 505842 14315835 ~ 14324438 (-)
LOC113534347 NA non-coding downstream 22247 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding downstream 23360 13783555 ~ 13783624 (-)
G99134 NA non-coding downstream 38514 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding downstream 41928 13764926 ~ 13765056 (-)
G99118 LOC108280567 non-coding downstream 159198 13645575 ~ 13647786 (-)
G99165 NA non-coding upstream 32826 13842819 ~ 13843229 (-)
G99166 NA non-coding upstream 34006 13843999 ~ 13844237 (-)
G99184 LOC101268919,LOC101159109 non-coding upstream 122560 13932553 ~ 13932934 (-)
G99188 smad3,LOC108264458,LOC107686302,LOC108424035 non-coding upstream 134758 13944751 ~ 13946911 (-)
G99187 smad3b,smad3,LOC108264458,LOC107738715,LOC108424035,LOC107686302,LOC107672260 non-coding upstream 140154 13950147 ~ 13950721 (-)
c6h15orf39 c4h15orf39 other downstream 244410 13550680 ~ 13562574 (-)
G98770 NA other downstream 754673 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1383006 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1401703 12396507 ~ 12405281 (-)
admb NA other downstream 1461532 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 525943 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1537173 15347166 ~ 15357563 (-)
G101178 NA other upstream 4377454 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6170076 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6585873 20395866 ~ 20416574 (-)

Expression


Co-expression Network