G106193


Basic Information

Item Value
gene id G106193
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27779132 ~ 27781800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125590
ATGTTATTAAAAGTAAGTCACGTATCATAGAGTACAAATTTCAGAGTTGCTTTGAATGTTAACTGAATTCTTGCAGTTTTTCTGCTGTGCTTTTATTCTGCCCATGGccttatttactgtatattttctgtttaatttatgtattgCTACATCCACTGGTCCTTTTCTAGTCACTTTTAAGGCCTTGGCTGAATTTGACTGAACTTTGCCCAAATTTCCCACAGTCCATCCTGCAGCCTTGAAATGTGTGCCAGACCTCGCTTCAGCAGTTCACTCCGTGCTCACGGTGAGAGGACATGGCACTTTGTAAAGTGAgctcatttatttttccttattcACATGATATAGTACAGAGTTTATAAAAAATGAGCTCCATTCCTCTGCATAATTCATCAGAAAATGGTCTTTTGCAGTGTAAGGTTTTTTATACTGACCCTGGGAACTGCTATCCATATTTAAGAATACAGGAGGTTGCTGTAGGACTGGGGATGTGACAAATTTATATGAATATCATCATAGATTATTTGTGATGCACTTTCCTAAGAGTATTTTGTGTGTTCTCAAACGTTCAGTGGCCGCTTTTAAACTCACTGAATTCTAGATTACTTTTCATGTACATTCACTTTTTTCTCCTTGTTTAACACCCACTCTTTTTCCCCGAATATATggtgaacaaatgaaaaacagacaaatttgTCTTTAGAAATGTACCAACAGGGGGTCCGAAAGTCTGAGATCACTAGCAAAAATGCTTcaattttgcattcttttctgaTTTACTACAAaccatttcattacaaatgatcaGCAACAccctgagtgaaaagtagaatcttagaaatatttacatgaatttcagagtttctgaaaaatgttcaaatgtttatttccaattttatattttaataagtttttcagtttgagtttttcaatttcagattttcaatgtggtctcagacgtTCTTACCTCACTGTATATTCACTGAAGAACAGCTAAAGAcagtattatttaaattatttagagACGTAAAGCAGAAAAGTTGGCGATAAACTCCAATCCACATCATTCAATCAGTCAGGGTCGCTGTAGATCCAGCGTCTATCCCAGAAACACCCTGAATAAGACGCTGGTCTATCacagggcaacacacacacacacacacacacacacaagttctcacacacactcatagccAATCCACCGGGATGTTTCTATGAACTACGAGagagaaataatataaaattgtagCATACAACAATATAATATTACAACACCGGTGATGACTGCGACTGCAGGGGTTAAATGTAATGCTGCTGGTTTGCGGTCACGTGGTTAGCATATCACATATTCGTTAAAGGTTTTTCCCTCTTCACCCACCTTAAATTTGGTCTTCACTGGAATTCCACAGTGGATCTTTCAGTAGAAATCTCCATTATGCATCTGGAATAATTACTGAATCTGTAGCTTTTCTCAGAGGGTAAGAACACTGGAAACACGGAGTAGCATGTGCAATAATGTTTAGTAAAAAGTTCATCACTGAGACGTTTAGAGAATTTTAGATGAGCACGGCGTCCTTTCCTCAATAAGGCTTGATTAAATATATAAGAATCTGCTGATTTGTATAAAGATGATGATAAATAGCAGGAACTCTGCTAACTGCATATCACTACATGGAACATATTCAACATTTTAACTGAAGGTATTTTGAGCAGTAATTATATTCTGATCTCATGCACAGTAAAACCTGCATTTATCTCCTGGACTGCTTTTTCCTGGGTTGCTGAGACACACAGTTTATTCCTTTATCATCTTCTTTTCATTTAGAACCAGCTAGAGGCTTATTGTTGAGATGACtttatggaaataaatacagaaGGGTTCTAAGGGAGGTTTTGTTTTGGAAGTATTTCCCCTGTGATTTGGACAATGTTGATGGTATTCTGTAAATAGTAGAGCTAGATGGTcccatttttgttgattttagtTTGGATTGCGAAGTCTTATGACTGTACATCCCTATATTTGTAGATAAATGTCCTTGCTAAATTGTAAATATAGGTCATGAATGTATGGcaagatttttctttctttctccctaaATTCGACAGTACAACttattgaaaatatttcttAGTCAAAACCGATTCTATTATTTAGTCTTttacttggatttttttttctcaagccTGTGTAGATGGACTCGTGACACAGACTGCACTTTTGCTtcgtgtgtttattttaaaactgtgcaATGAAAGACTGATGgatacatgtgtttttttttttttttttaatggacaaGAAACATAAGCAAGAATGTGAtctaagtaataaaaatgaaggaaGGTACAGTCCAAGGTTTGTGACGAAGAGGTACAGACTGAAACCCAAACTGGAaaccccacagattttttttttttctgctcctttGCAATGACTGAAACCAaatttgtttcactttttttttttttttttttggtactgtCTGTAGAATATTACTCAGAATTGCTTACAACATGGACTAAACCATCTTGTAAAAAGCTCTGGCTGTGACATTTTCTGCCATGTAATATGGAGATGTAACAAACTGAAcagatggtggatttttttaaatgtctgtacAGATTATGATTTGTGAGTTTAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125590 True 2647 lncRNA 0.35 2 27779132 27781800

Neighbor

gene id symbol gene type direction distance location
si:ch73-386h18.1 zfhx3,LOC108264658 coding downstream 10329 27734339 ~ 27768803 (-)
otogl otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding downstream 70361 27662408 ~ 27708771 (-)
ptprq ptprq,LOC108413201,LOC107705767 coding downstream 120295 27602226 ~ 27658837 (-)
wash1 wash1,LOC103045331,LOC107686618,LOC107564895 coding downstream 221162 27546497 ~ 27557970 (-)
fkbp4 fkbp4,LOC107686573,LOC107705800 coding downstream 254616 27515680 ~ 27524516 (-)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC105906547 coding upstream 21 27781821 ~ 27823226 (-)
wdr59 wdr59,LOC107686576 coding upstream 43524 27825324 ~ 27846822 (-)
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding upstream 73036 27854836 ~ 27859361 (-)
zdhhc7 zdhhc7,LOC108435925,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043 coding upstream 83309 27865109 ~ 27878619 (-)
LOC113526894 LOC108263898 coding upstream 144090 27925890 ~ 27939822 (-)
LOC113526487 LOC108264058 non-coding downstream 590340 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 634258 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 649960 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 671561 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 903298 26875595 ~ 26875834 (-)
G106195 NA non-coding upstream 80040 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 163016 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 171718 27953518 ~ 27953990 (-)
G106260 NA non-coding upstream 172464 27954264 ~ 27954479 (-)
G106264 NA non-coding upstream 181971 27963771 ~ 27964010 (-)
si:dkey-151j17.4 NA other downstream 619033 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1170793 26569085 ~ 26608339 (-)
G105376 NA other downstream 1538127 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2230204 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2699620 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1838999 29620799 ~ 29714001 (-)
G107525 NA other upstream 2561731 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2946244 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3003793 30785593 ~ 30849697 (-)
G107803 NA other upstream 3034779 30816579 ~ 30820422 (-)

Expression


Co-expression Network