G106195


Basic Information

Item Value
gene id G106195
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27861840 ~ 27905029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125592
accTGTGTTGAATCTGAATGGCAATggaggaaatgagagaaaaaaaaggaaggaaataagagagaaaatgaaataacataaaaaagaaggaaagaaagacaatgaAGGAGGGAACGAGGATGGAAAGAAAAAGCAATGGAgcaaggatggatggatggatggatggatggatggatggatatgaTGAATTTGAATGCACTGACAATGTGCTATAATGTTACCTGGATCCTGGGATTACAGCATATAATCAATGATTTTCTTAAGCACAACTTAACCAAattcattattgtttatttatcatcacTTGATCGAGTAAACAATTTCACATTTCCTGAAAttgtacatacacatacagtgtatgtgtgtgtttggtgaaaaCCCTTTATActgtgacatttacattttttatacaactgCATATAGTTCTGAGAATAAACTACAcgttttcctgaactgaaatatgtttctcaaCTACAGATCAAGTTCCTGCATTTGAAATTCTGATTTCCGCTgaactggaatgaaatctttaccttacattttacatttaaaatgtaaagaacaGCTTTATTTGTAACTGAGTTCCTTGTAAAAGAGAAACAGTTCAGGAAAGCGTAAAGTTCTCACTGTAAAGTTTGCACTGTGTATATAAGCAGAAAATGTCCAAATGTGAAGACGTGAAGGGTTTTTGAAAGCCACCACACATTTAAAGAAGAAAACCAATTTTGGCCCCTTTTTTGGCCCGAATTGAGAGCTTGTACATGTATGTATTTGGAGTCTGTATAGCCGAGAGCCAGTCGGTCACTTTGCACTTTTCTCCAGCAGTGAGCTGTTGAAAGATCATCACTGACAAATGACTGAAAAGACACAatgtccattaaaaaaaaaaccagtccAATCTGAGATGCAGGAGTGTGTTAGGTGAGTGTGTCCTCGTTTCTGATGTACTCTCCCACATCAGCCTGGTGAAACACCACAATGGCCATGGGATCCACTTTGCGGCATTCCTGTGTGGTTTTCGCTGCCACTCCAAAACCCTTGGTACGTCTGCCATCGAGTAAACCACCACTCCTTGGTACTGAGCCGTGTTTTCTGTAATCCTGCCCAGGCCGGACTTCATGATGTGGTTGCCGTACAGGAAAGACTGCTCAGCTCCAGGCTTCACCCACACTTTATACTGTACAGAAGACACGTGAAGCAGCGTGAGGCTCAACGTACAGCTGGGAAACATGATGATGTGATACTCAGCATTACGGATGCACtgatgccatttttttccccaggccGAGTACAAGTATGTTTTTAAGTTCTCGTCGAGACTGATATTAAAACTGGAGTAATCTCCAGTAACCCACAGGCGCATGGACGCTTGTCTACGTAAAGATGcagacactagaaaagttttCCATGCACACTTTCGTCTGTTTGCGTAAAGATGcagacactagaaaagttttccatgcacactttctttcttcctgttgtAGGAAGATGTTACAGCAATTAACAAGagagtgtgcatgtaaacttttctacaGCTTAACTGAAACAGATTACTGtggtggttaccgtaaaaccctgtatatacacGCACTCCAGATTTTACCGCAACAGACTCGCGTAGTCTGAACTAGTTTGAACGGGACTAAGGAgagcaaacagcatttttaaatcGCTTTCTAATGATCATCACCATTAAAATGGTTTGTAAAGTTTTGATTTGACACTTCATTgtagacatttttgttttcagtcaAAATTTTTGCCTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125592 True 1772 lncRNA 0.40 3 27861840 27905029

Neighbor

gene id symbol gene type direction distance location
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding downstream 2479 27854836 ~ 27859361 (-)
wdr59 wdr59,LOC107686576 coding downstream 15018 27825324 ~ 27846822 (-)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC105906547 coding downstream 38614 27781821 ~ 27823226 (-)
si:ch73-386h18.1 zfhx3,LOC108264658 coding downstream 93037 27734339 ~ 27768803 (-)
otogl otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding downstream 153069 27662408 ~ 27708771 (-)
LOC113526894 LOC108263898 coding upstream 20861 27925890 ~ 27939822 (-)
LOC113526564 dbndd1 coding upstream 278504 28183533 ~ 28205626 (-)
foxf1 foxf1 coding upstream 324409 28229438 ~ 28233387 (-)
irf8 irf8 coding upstream 510106 28415135 ~ 28422985 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding upstream 518768 28423797 ~ 28446938 (-)
G106193 NA non-coding downstream 80040 27779132 ~ 27781800 (-)
LOC113526487 LOC108264058 non-coding downstream 673048 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 716966 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 732668 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 754269 27105368 ~ 27107571 (-)
G106258 NA non-coding upstream 39787 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 48489 27953518 ~ 27953990 (-)
G106260 NA non-coding upstream 49235 27954264 ~ 27954479 (-)
G106264 NA non-coding upstream 58742 27963771 ~ 27964010 (-)
G106265 NA non-coding upstream 60034 27965063 ~ 27966251 (-)
si:dkey-151j17.4 NA other downstream 701741 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1253501 26569085 ~ 26608339 (-)
G105376 NA other downstream 1620835 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2312912 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2782328 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1715770 29620799 ~ 29714001 (-)
G107525 NA other upstream 2438502 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2823015 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2880564 30785593 ~ 30849697 (-)
G107803 NA other upstream 2911550 30816579 ~ 30820422 (-)

Expression


Co-expression Network