G106259 (LOC108263905)


Basic Information

Item Value
gene id G106259
gene name LOC108263905
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27953518 ~ 27953990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125661
cacacacacacacacacacacacacacacaaacattcaggaACTCAGGGCTTGAGTGTGTTGAATTTAAGCACTAtgctgtttcttttattttaatgttgtccCAAACAGACAGCTCCATATTGTACCTGTGTGTAATGCTTGCAGGTGTGGTTGCTTTTGCACTGTCCGTTTTGATAGACGTAGTGATGCCCTTCCTGGAACCACGAGTTGATGATGTCAGAGTAAGAGGCTACACCATGAGGAGACTGATGGATGTTCCAGCCGATGTGCTCGGTGTCCACTTCTGATCCAGTGCTGTTCTTTGAGCAGGACTCAGCCCTTATCTGAGCCAGTGCAGCCAGCGTGTCACTCCACTCCTGAGCAAGGATTAACCAAAAATAAGAaatcaaacacatacacatgcaatgCCTACCCTGAGCATTCTAAGTTCCTACTGAGCTGCAGTAGAAACTCTTCTGAGTTACAGTGAGA

Function

NR:

description
PREDICTED: C-type lectin domain family 18 member B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125661 True 473 lncRNA 0.46 1 27953518 27953990

Neighbor

gene id symbol gene type direction distance location
LOC113526894 LOC108263898 coding downstream 13696 27925890 ~ 27939822 (-)
zdhhc7 zdhhc7,LOC108435925,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043 coding downstream 74899 27865109 ~ 27878619 (-)
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding downstream 94157 27854836 ~ 27859361 (-)
wdr59 wdr59,LOC107686576 coding downstream 106696 27825324 ~ 27846822 (-)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC105906547 coding downstream 130292 27781821 ~ 27823226 (-)
LOC113526564 dbndd1 coding upstream 229543 28183533 ~ 28205626 (-)
foxf1 foxf1 coding upstream 275448 28229438 ~ 28233387 (-)
irf8 irf8 coding upstream 461145 28415135 ~ 28422985 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding upstream 469807 28423797 ~ 28446938 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding upstream 494749 28448739 ~ 28452315 (-)
G106258 NA non-coding downstream 8485 27944816 ~ 27945033 (-)
G106195 NA non-coding downstream 48489 27861840 ~ 27905029 (-)
G106193 NA non-coding downstream 171718 27779132 ~ 27781800 (-)
LOC113526487 LOC108264058 non-coding downstream 764726 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 808644 27143707 ~ 27144874 (-)
G106260 NA non-coding upstream 274 27954264 ~ 27954479 (-)
G106264 NA non-coding upstream 9781 27963771 ~ 27964010 (-)
G106265 NA non-coding upstream 11073 27965063 ~ 27966251 (-)
G106269 NA non-coding upstream 13992 27967982 ~ 27968201 (-)
G106319 NA non-coding upstream 84100 28038090 ~ 28078875 (-)
si:dkey-151j17.4 NA other downstream 793419 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1345179 26569085 ~ 26608339 (-)
G105376 NA other downstream 1712513 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2404590 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2874006 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1666809 29620799 ~ 29714001 (-)
G107525 NA other upstream 2389541 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2774054 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2831603 30785593 ~ 30849697 (-)
G107803 NA other upstream 2862589 30816579 ~ 30820422 (-)

Expression


Co-expression Network