G106336


Basic Information

Item Value
gene id G106336
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28069599 ~ 28070870 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125749
ctgctgttacagaaaattaatcccCACCTTCTGATAGGAGAATTCAAGTGGTGTAGTGGTGCACAGTGGTATAATAAATGATAACTTACTTCTTATAAATCATCATTGGTCATGGAACCACAAACCAAAATACTGTAATTGCTATCAACACTGCAGACAAAAAGGAGCAGTGGTAGCGAGTCTTTGGGAAAtagacacaaaataaaacaattctctTTTACATTACCACATTACTGCAGATGTTTGTGCTAAGTTTGTTTAATAATTGCAGAAATTACATTGGTACTGTAATTTAACCCCAAAGCTTCAAACACAAGAGCCCTTAGACTGCCTGGCTGTGGGAATGGAGATAATAACCTGCTGTTGTACTCGcaattgttttctttaatgtaCACATTATTTTGCTATGTAACTTTTTCCGTCCATCACAtcagctgaaacatttattttacttcagGACATATTAGTAAATAGGACAGTCAGGtaggacagaaacagaaatatataacaACACTGACCTGTAGTTTTATATTACGCTTTGTGCATATTGTGCATTTTCATACAACTGAGCCATTGTAAGTGACCTGTAACAGAGGTGTAAGAGCAATAAGCGTTATTTTTCACGTGTAGATGAGCTTATAGGTGCACCTTCAGCCAGACATCAGGATCAGGCAGATCAGTGGAGGTCAGTGTGAATCAGTGTGAATCAGTTTGGTCCCTGCACTTGTTAGCTCCCCCTGTAGGTGCTGTATGAAAAGCGACTCAGGAGCAGTGGGATGTGGAACTTCTGAGAAGCATCAGCGATGGTGAAGACAATCTACAGGCAACAAagtgaaaaaggaaaaaaggattGAGCGGGGAAAAACAGTTATTCAagagttcttcaagggttcttagcttcctataAAGGGTTCTCCTTGAAATGCTTTCTGATAGGGACTACACTGtgttgtaggattctacatTTAAGATTTGCCTCAGAGGGACAATTATAGAACTGGCAAggattatacattatttaagaGTGTAACATAAAACCTTTCCTCTAGAGAACCTTGTTTTCCACAATCCTTTTACTTTAGGATTAATTGTATCTGTATGTTTGTgatgtattattatatgtcaCTGTAAAGTGACTTTGGGTGTGAGAAAAGTGCTatgcaatcaatcaat

Function

GO:

id name namespace
GO:0046914 transition metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU125749 True 1173 lncRNA 0.38 2 28069599 28070870

Neighbor

gene id symbol gene type direction distance location
LOC113526894 LOC108263898 coding downstream 129777 27925890 ~ 27939822 (-)
zdhhc7 zdhhc7,LOC108435925,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043 coding downstream 190980 27865109 ~ 27878619 (-)
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding downstream 210238 27854836 ~ 27859361 (-)
wdr59 wdr59,LOC107686576 coding downstream 222777 27825324 ~ 27846822 (-)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC105906547 coding downstream 246373 27781821 ~ 27823226 (-)
LOC113526564 dbndd1 coding upstream 112663 28183533 ~ 28205626 (-)
foxf1 foxf1 coding upstream 158568 28229438 ~ 28233387 (-)
irf8 irf8 coding upstream 344265 28415135 ~ 28422985 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding upstream 352927 28423797 ~ 28446938 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding upstream 377869 28448739 ~ 28452315 (-)
G106269 NA non-coding downstream 101398 27967982 ~ 27968201 (-)
G106265 NA non-coding downstream 103348 27965063 ~ 27966251 (-)
G106264 NA non-coding downstream 105589 27963771 ~ 27964010 (-)
G106260 NA non-coding downstream 115120 27954264 ~ 27954479 (-)
G106259 LOC108263905 non-coding downstream 115609 27953518 ~ 27953990 (-)
G106356 NA non-coding upstream 26903 28097773 ~ 28097994 (-)
LOC117597514 NA non-coding upstream 188827 28259697 ~ 28261304 (-)
G106653 NA non-coding upstream 529249 28600119 ~ 28601535 (-)
G106655 NA non-coding upstream 533443 28604313 ~ 28605437 (-)
G106656 NA non-coding upstream 535388 28606258 ~ 28608041 (-)
si:dkey-151j17.4 NA other downstream 909500 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1461260 26569085 ~ 26608339 (-)
G105376 NA other downstream 1828594 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2520671 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2990087 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1549929 29620799 ~ 29714001 (-)
G107525 NA other upstream 2272661 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2657174 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2714723 30785593 ~ 30849697 (-)
G107803 NA other upstream 2745709 30816579 ~ 30820422 (-)

Expression


Co-expression Network