ppfibp1b (ppfibp1)


Basic Information

Item Value
gene id ppfibp1b
gene name ppfibp1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11543660 ~ 11576988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305373.1
ACGTCACCGCCTTCCCGATTCATTGTCGCCATGGCGCAGGCGCAGGCGGAGGGGCAGCGCGGAGTTGAGGGAGAGCAAAGCTTGTGAAATTCAATTTTTACAACAAGGACGACGGAGAAAGTTCCAGTCTAACAGGATAATTTCGTTTTAGGTGGTTTCAAGTCCAGTCCGGCTTCTGGGTTAACTAAACGGATTGAAGATGATGTCTGATGCCAGTGATATGTTGGCAGCTGCTTTGGAGCAAATGGATGGCATCATAGCAGGCTCCAAATCACTTGACTATTCCAATGGGATCTTTGACTGCCAGTCTCCAACCTCACCGTTCATGGGAAGCCTGCGGGCGCTGCACCTAATCGAGGATCTGAGGGGGGTTTTGGAGCTCATGgacacagaggagagagagggactgCGCTGCCAGATACCCGACTCGACAGCACACAGTCTGGTGGAGTGGCTACAGGGACAACTATCAAATGGGCACATTTCAGTGACTGGTGATATTTACCAAGACAGACTAAATCGCCTTGAAAGTGACAAGGAATCCCTTGTGCTTCAGgTGAGTGTCTTGACAGACCAAGTGGAAGTCCAAGGAGAAAAGATAAGAGACCTAGACTTGTGCCTTGAGGAACACCGTGAAAAACTGAATTCCACTGAGGAAATGCTACAACAGgagcTTATCTGTAGGTCAGCACTTGAGACCCAGAAGCTGGAGCTGATGGCTGAGATATCCAATTTAAAGCTAAAGCTGACTGCCATGGAGAAGGAGAGAATAGACTTTGATGAAAGATTCAGAGATAGTGAGGGTTTGATCCTAGAGATTAATGAGCTGAGGTATCGCATTTCTGAGATGGAGAGCGAACGGTTGCAGTATGAGAAGAAGCTGAAGTCTACCAAGTCGCTAATGGCAAGACTGTCTAGCCTGAAAATCAAAATGGGCCAGATGGAGTATGAAAAACAGAGGAAGGAACACAAAATCCAGGCACTCGAGGAGGAGCTGGCTATTTTAAGAAGGCAGCTGGATGGTAAAGATGGAGAACTAAGGAGGCTACAGGATGAGACAGGGTCCAGATCGTCCACACCTGCAGGCTTAGAAACCACTGAGAGAGAGGATACTTTTAAGCAGAGGCTCAAAGAGAAACATTTGGAAGTGCAAAGAATGAAGAAAGCGGTTGAGTCACTTATGGCAGCCAATGAAGAGAAGGATCGCAAGATTGAAGAGCTTCGACAGTCACTTACACGTTACAAGAAGGTGCAAGACATGGTCATGTCCGTGCAGGGGAGAAAAGATaaactgaaagaagaagaaagtgatGAGAGCCACAGTGACAGCTCTCTCTCCATGTCAACGGCAATGTCGGTTTCCATGGATGCTGAAAAGTCCGTCCTGTCATGTGCTGAGGAAGTGAAGAGTCAAGATGAGCCGACGACATTTATCAGCACGCTGCATGTGTCTTCACTCACATCCACGCAACAACCCAAACTAGAGACTGATGTGAACCTGGAGCCAGTGCAGTCACAGAGTGATGCAGTGCATCAGGAGCCAAGCCAGTCACAGGAGCCCGAGATAAATACCAGTCTGGAAAGTGTGGAGGTCCCCAAATCTAGCAGCCTGACTAAACTGGATGGCAGCACTAGTGAAAAGAGGCCTTTGGCAGTTGGAAAGAGTCCAGCAGAGAGTCGTGCTTTTGATGAATTCAACAAGATTACAACTTTACCGCCGAAGTCCACTAGCAGCTCCCGTGCTGTTGAAGATGACGCTTTTGGCACAAAGAAGGCGAGATCTTCTTTTGGACGAGGTTTCTTTAAGCTCAGAGGAGGCAAGAGAACAGCCAGTGCTCCAAATCTTGcTGAGACAGAGCACGACGGCATGGACCAtctgaatgtaaatacagacggtttacctcaagatTCAAGCAACAGTgatagcacacacactctctccagctGCCTAGAGGGCAAGAAGAAGTCTAAGGGAATCAAAGCATTCATAGGAAAGCTTACAAGAAGTCAGTCAACCACATTCACCTTGGATGACAACCTATCAGAGAACGAGTTTAAGCGGGGAGGAGTCCGAGCCACCGCCGGTCCCAGGCTGGGATGGTCACGTGACCTGCACAACACTAACAGtgaggtGGATGCTCCATTTGCGCGATGGTCTCGGGAGCAGGTGTGTGACTGGATGCAGGAGCAGGGACTGGGTCTGTACGTGAACCTGGCCAGACAGTGGATTTCCTCAGGACAGACTCTCCTGCAGGCTTCTCCACAGAACTTAGAAAAGgagctggGTATCAAGCATCCTCTCCACAGGAAGAAACTGCAACTGGCTCTGCAAGCACTGGGCTCTGAAGAGGATGACAACAAGGGCAAACTCGACTACCAGTGGGTGACAAGGTGGCTTGATGATATTGGACTTCCTCAGTACAAAACTCAGTTTGATGAGGCAAGAGTGGATGGGCGAATGCTTCACTACATGACCGTGGATGACCTGCTGTCTCTGAAAGTGGGCAGTGTGCTGCATCACCTCAGCATTAAGCGAGCAATCCAAGTGCTCCGCCTCAACAATTACGAGCCCAACTGTCTGCGCCGCAGACCCTCAGATGAGAACAATATCACTCCGGCTGAAATCTCTCAGTGGACCAATCACCGTGTGATGGAGTGGCTGCGTTCTGTAGATCTGGCAGAATACGCACCCAATCTGAGGGGCAGTGGAGTCCACGGAGGACTGATGGTTCTAGAGCCTCGCTTTAATGTGGAGACAATGGCGCTGCTTCTGAACATTCCTCCCAACAAGACCTTGCTCCGAAGGCACCTGGCTACTCATTTTAACCTGCTGGTGGGCTCGGAGGCCCAGCAGACCAAGCAGGAGTGTATGGAGAATCCTGACTACACTTTACTCACTGCAACTGCTAAGGTCAAGCCAAGAAAACTGCCATTCGGGACCTTTGGGACGTTGAAGAAGAAGAGACAGGAGGATAGCGAGGAGTATGTGTGTCCCATGGACGTGGAGATGCCAAAAGGACACAGTTTCCAGAAGGGCTTCAGAGGCATGGAGCTGCACATTTACGAGGATGACCTGGACCGACTAGAACAGATGGAGGACTCAGAGGGAACTGTGCGACAAATTGGGGCTTTCTCAGAGGGCATCAACAATTTGACGAGTATGCTGAAAGATGACGAGTTCTTTAAGGAGATTGTAACATCGTCCCCCAACCCCAGCGTGACTGATGATGACTCCAATGTTTGAGGACGTTTTTTTGGGCACAACTGCCCATAGTGGTGCTGCTGTGATCAGAACTGACTGTGCCAACCTCTctgcacatctctctctctctgtctgtcagtgctAGCTATATCTTATGAGTGTATTCACCTTTTGTAAACACCTATAAAAGAACCGCAATACAGTATTTGCCACAGTACAGTGCAGAATAGGTGTCATTCTTTAAGCTAAAATATGGGTCAAGGTTGTGAATCTGTCTCCCTGGAGCAGATGTAAGATTTATTGAATAGTCAGTCTTGTCTTTGCTTGAGATTGTATGATTACAATGTTGGGCTTCAGTGACATATTTTTACAGAGAgtttttaagggaaaaaaatggcagcCCTACTGTAGTTTGCCTCCCAACTGGGGACTGGAGATTTTATGCACAGTTTTTTCTACTGGCCTTCCACTCCCATCTGTTGTGTCCATTATGGCAAACGGAGCACAATGACACTTTTAGCCTCTGAATAATAGAATTTATTTTAGGAAATGAGATTAAAATAAGcacagtttaaaagaaaaaaaaacagtcctttTAAACACTCCTAGTAAGTATTGCCAAATTCCACAATGACCATGTGATGTCtgtcatatttacatttttcttgaaATTTTCTCACAGTAtttcataaatttatacaagGTCCATTTGACCCTGAATTCTGCATATGCTTATTGATGTCTGTGTTTGCATGCAATATCTTTAACACTATGAAAACTCAGTACATGCCATGTGAAGGAATAGCGTCCCACCGAGGTTGTTTTCCTACCCATTgatcccagtgttcctgggacacaCACCGTATCCACCATGACCTTATCCAGGATAAAgacattactgaagatgaaatgtATTGAAAACTCAGTACAGTGTATTGGATGCCCTATTTGTACAGTTGCATGTTATTTAagcttttctcattttttaatattgtgcaTCAGTTAACATATCAaaattttcttattattaatcaaAGCAATGTTTTTTTGGCAGCCATActtgtgtgttcttttattatGCTCATTTGTAAAAGGTCAATAAATTAAAGTGTAGCACAGTCTCA

Function

symbol description
ppfibp1 Enables cadherin binding activity. Predicted to be involved in neuromuscular junction development. Located in focal adhesion.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305373.1 True 4326 mRNA 0.46 30 11543660 11576988

Neighbor

gene id symbol gene type direction distance location
endouc LOC108264851,LOC108425714 coding downstream 1279 11537242 ~ 11542381 (-)
polr3b polr3b,LOC107664690 coding downstream 7996 11508775 ~ 11535664 (-)
rfx4 rfx4 coding downstream 36970 11489642 ~ 11506690 (-)
ric8b ric8b coding downstream 59202 11470088 ~ 11484458 (-)
tmem263 tmem263,LOC107664679,LOC107583827,LOC107740170 coding downstream 89782 11449484 ~ 11453878 (-)
si:ch211-245j22.3 si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778 coding upstream 1257 11578245 ~ 11581884 (-)
si:ch211-219a15.3 LOC108264201 coding upstream 95393 11672381 ~ 11675853 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding upstream 328620 11905608 ~ 11926257 (-)
rassf9 rassf9 coding upstream 458986 12035974 ~ 12047751 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding upstream 490042 12067030 ~ 12191361 (-)
G97831 NA non-coding downstream 66546 11396116 ~ 11477114 (-)
G97607 NA non-coding downstream 352820 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 355637 11187495 ~ 11188023 (-)
G97246 mlycd non-coding downstream 882608 10657192 ~ 10661052 (-)
G97225 NA non-coding downstream 1022663 10520795 ~ 10520997 (-)
G97932 NA non-coding upstream 103741 11680729 ~ 11696665 (-)
G97931 NA non-coding upstream 114009 11690997 ~ 11693079 (-)
G98342 NA non-coding upstream 697287 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 698734 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 900915 12477903 ~ 12478277 (-)
pdf pdf,spata2l other downstream 364052 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 961758 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 1248837 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 1625179 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 1771640 9750882 ~ 9772020 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 9069 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 175537 11752525 ~ 11769986 (-)
sspn sspn other upstream 293920 11870908 ~ 11878204 (-)
admb NA other upstream 734834 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 819519 12396507 ~ 12405281 (-)

Expression


Co-expression Network