LOC113534661


Basic Information

Item Value
gene id LOC113534661
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9750882 ~ 9772020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU114861
AATACTTACTTCCTGTTCCATTGTTGTCCTGTTTCATGGACTATATAAagacatatttacacacactttgtgaGGTTTTGCTAGTATTTTGTTGCATTCAACTTATATTGGAAGTGGGAAGTCTGTGCTTGGAATTATATCATTTTCAACCTCCATGCATTTGAGCTGCAAATTGGGAACAAaccatggatgcctccatgcttgccagctaactgtgatgagttgattttatattttcctcctcaagaCAGCTAATGGTCTTTACCCTTCGGCATTCAGGGTGAAGAGAGGTGTGGCACTACTGGTGAACCCCATATTTCAAAACTCTGTAAAGGATGTCGATTTGCTATATGAAATTCTGCTGAATGGACTGCAGTTTGAAGATGAACTCGGTCAGTTTTCAGTTCGTGACAAAGAACTAGCATCGCTCCGTAAGACACACAAGTTAGAAGTCATCTGTGAGGACATTATTCCCAAGACGGTGCCCCAGGTGCGTCGACTGACCTTTGCTCTGGCCCAAGACATGGGTGTTCTTAGGACGGAAGACTTTGAGCGCACAGTGCTGACATTGGTGTACACGGCTAATAAAATAGCTCAGGCCAGCACAGCACACCAGAAAGATGCTTGGGCAGAGTGCTTTATCAGCCTATACGAAGCCATAAAACACGACTTAACCATCAGATAAAGGAACCATCAGATAGAGGAACCATCAACACGTCAGATCGGCAGAAAAACAGCATAACCTCTGGTAGCTTtgatatacaaatatacatatacacacacatacatgcatgcatgcatacatacatacaaacatacatacataacgCTCATATATATCGCTCATGTCTATCACTCATGTCTATCGCTCATATATATGAAACTTGTTGGAACTTTAGTATGCAGTTAGAATCATGCAGTTAGaaatttgaattgaaattcAGTTTCAGAATTTCACACTTAAGGGTGAAATGACCGtttgaaatgcaaaatgaaGATTCATTTGAAACAGGGAAAAGGGTTTCTGTGTTTAATTGCTTTTGccttttgtatgtgttttttttggtttattaaagCACAATGAATGCAGAAATGCAGTTATTCCCAGCAaagttattttcatataat
>XM_026927611.2
GTTGTCCTGTTTCATGGACTATATAAagacatatttacacacactttgtgaGGTTTTGCTAGTATTTTGTTGCATTCAACTTATATTGGAAGTGGGAAGTCTGTGCTTGGAATTATATCATTTTCAACCTCCATGCATTTGAGCTGCAAATTGGGAACAAaccatggatgcctccatgcttgccagctaactgtgatgagttgattttatattttcctcctcaagaCAGCTAATGATGGAAATACAGCCCACTTcccagagagagggagagcgagagagagagagtagcaCAAATAACTTGTTAGTCTGTAGTGGCACTACTAAAGACAGGATGGGAGCAAGCAGGCTGCCTTGGAAAGTCATCATCATCtccctgttttattccttatgtgcAGCTCATCACAGGTATAAAGGTCTTTACCCTTCGGCATTCAGGGTGAAGAGAGGTGTGGCACTACTGGTGAACCCCATATTTCAAAACTCTGTAAAGGATGTCGATTTGCTATATGAAATTCTGCTGAATGGACTGCAGTTTGAAGATGAACTCGGTCAGTTTTCAGTTCGTGACAAAGAACTAGCATCGCTCCGTAAGACACACAAGTTAGAAGTCATCTGTGAGGACATTATTCCCAAGACGGTGCCCCAGGTGCGTCGACTGACCTTTGCTCTGGCCCAAGACATGGGTGTTCTTAGGACGGAAGACTTTGAGCGCACAGTGCTGACATTGGTGTACACGGCTAATAAAATAGCTCAGGCCAGCACAGCACACCAGAAAGATGCTTGGGCAGAGTGCTTTATCAGCCTATACGAAGCCATAAAACACGACTTAACCATCAGATAAAGGAACCATCAGATAGAGGAACCATCAACACGTCAGATCGGCAGAAAAACAGCATAACCTCTGGTAGCTTtgatatacaaatatacatatacacacacatacatgcatgcatgcatacatacatacaaacatacatacataacgCTCATATATATCGCTCATGTCTATCACTCATGTCTATCGCTCATATATATGAAACTTGTTGGAACTTTAGTATGCAGTTAGAATCATGCAGTTAGaaatttgaattgaaattcAGTTTCAGAATTTCACACTTAAGGGTGAAATGACCGtttgaaatgcaaaatgaaGATTCATTTGAAACAGGGAAAAGGGTTTCTGTGT
>XM_034305081.1
ttgacgtcacttgctgaacctGGAGTTGAAGAGACCATCCTGAGTAACCATTCaaagttgagggggtgttttctttggtcAGAAATTACAAGTTATGAACTTTAATTGATgcagtatatataaatacatattcatacacacacacacttgccagTGTTTATACAAAGTTAGTATCTTTCTGATGTTCTTGTGTTTTGACTTGTGCTCTGCCTTAAGGACTATTTTTCAGATTGTTTTGACTATTGACTAAGATTGTGGACTTATCTGTGTTTTGACCTGTGCCTGTTTACTAATATGTGATACTGACACCAAAACAAAGATTAGGATGACCATAAGAAACAGACGTGACATATTATGCAGTTATACATACTGCTAATGATGCATCAACAGTTTTGGAAAATGTATCCACAAGGACAACGCTAGCCAGCAGATTCTCCAGTCTCGATActagatacactatatgtctaaagATGGAAATACAGCCCACTTcccagagagagggagagcgagagagagagagtagcaCAAATAACTTGTTAGTCTGTAGTGGCACTACTAAAGACAGGATGGGAGCAAGCAGGCTGCCTTGGAAAGTCATCATCATCtccctgttttattccttatgtgcAGCTCATCACAGGTATAAAGGTCTTTACCCTTCGGCATTCAGGGTGAAGAGAGGTGTGGCACTACTGGTGAACCCCATATTTCAAAACTCTGTAAAGGATGTCGATTTGCTATATGAAATTCTGCTGAATGGACTGCAGTTTGAAGATGAACTCGGTCAGTTTTCAGTTCGTGACAAAGAACTAGCATCGCTCCGTAAGACACACAAGTTAGAAGTCATCTGTGAGGACATTATTCCCAAGACGGTGCCCCAGGTGCGTCGACTGACCTTTGCTCTGGCCCAAGACATGGGTGTTCTTAGGACGGAAGACTTTGAGCGCACAGTGCTGACATTGGTGTACACGGCTAATAAAATAGCTCAGGCCAGCACAGCACACCAGAAAGATGCTTGGGCAGAGTGCTTTATCAGCCTATACGAAGCCATAAAACACGACTTAACCATCAGATAAAGGAACCATCAGATAGAGGAACCATCAACACGTCAGATCGGCAGAAAAACAGCATAACCTCTGGTAGCTTtgatatacaaatatacatatacacacacatacatgcatgcatgcatacatacatacaaacatacatacataacgCTCATATATATCGCTCATGTCTATCACTCATGTCTATCGCTCATATATATGAAACTTGTTGGAACTTTAGTATGCAGTTAGAATCATGCAGTTAGaaatttgaattgaaattcAGTTTCAGAATTTCACACTTAAGGGTGAAATGACCGtttgaaatgcaaaatgaaGATTCATTTGAAACAGGGAAAAGGGTTTCTGTGT
>XM_034305082.1
ttgacgtcacttgctgaacctGGAGTTGAAGAGACCATCCTGAGTAACCATTCaaagttgagggggtgttttctttggtcAGAAATTACAAGTTATGAACTTTAATTGATgcagtatatataaatacatattcatacacacacacacttgccagTGTTTATACAAAGTTAGTATCTTTCTGATGTTCTTGTGTTTTGACTTGTGCTCTGCCTTAAGGACTATTTTTCAGATTGTTTTGACTATTGACTAAGATTGTGGACTTATCTGTGTTTTGACCTGTGCCTGTTTACTAATATGTGATACTGACACCAAAACAAAGATTAGGATGACCATAAGAAACAGACGTGACATATTATGCAGTTATACATACTGCTAATGATGCATCAACAGTTTTGGAAAATGTATCCACAAGGACAACGCTAGCCAGCAGATTCTCCAGTCTCGATActagatacactatatgtctaaagGTCTTTACCCTTCGGCATTCAGGGTGAAGAGAGGTGTGGCACTACTGGTGAACCCCATATTTCAAAACTCTGTAAAGGATGTCGATTTGCTATATGAAATTCTGCTGAATGGACTGCAGTTTGAAGATGAACTCGGTCAGTTTTCAGTTCGTGACAAAGAACTAGCATCGCTCCGTAAGACACACAAGTTAGAAGTCATCTGTGAGGACATTATTCCCAAGACGGTGCCCCAGGTGCGTCGACTGACCTTTGCTCTGGCCCAAGACATGGGTGTTCTTAGGACGGAAGACTTTGAGCGCACAGTGCTGACATTGGTGTACACGGCTAATAAAATAGCTCAGGCCAGCACAGCACACCAGAAAGATGCTTGGGCAGAGTGCTTTATCAGCCTATACGAAGCCATAAAACACGACTTAACCATCAGATAAAGGAACCATCAGATAGAGGAACCATCAACACGTCAGATCGGCAGAAAAACAGCATAACCTCTGGTAGCTTtgatatacaaatatacatatacacacacatacatgcatgcatgcatacatacatacaaacatacatacataacgCTCATATATATCGCTCATGTCTATCACTCATGTCTATCGCTCATATATATGAAACTTGTTGGAACTTTAGTATGCAGTTAGAATCATGCAGTTAGaaatttgaattgaaattcAGTTTCAGAATTTCACACTTAAGGGTGAAATGACCGtttgaaatgcaaaatgaaGATTCATTTGAAACAGGGAAAAGGGTTTCTGTGT

Function

GO:

id name namespace
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114861 False 1128 lncRNA 0.39 3 9750882 9772020
XM_026927611.2 False 1186 mRNA 0.41 4 9750980 9771998
XM_034305081.1 True 1421 mRNA 0.40 4 9750980 9771620
XM_034305082.1 False 1243 mRNA 0.40 3 9750980 9771620

Neighbor

gene id symbol gene type direction distance location
bicd1a bicd1,LOC107722484 coding downstream 18104 9694077 ~ 9732778 (-)
fgd4a fgd4 coding downstream 58797 9625063 ~ 9692085 (-)
tbxas1 tbxas1 coding downstream 336495 9349891 ~ 9414387 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding downstream 530678 9217244 ~ 9220204 (-)
LOC113534306 LOC108264223 coding downstream 539952 9205345 ~ 9210930 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding upstream 225793 9997813 ~ 10018683 (-)
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding upstream 523831 10295851 ~ 10398875 (-)
wfdc1 wfdc1,LOC102778323,LOC107553961 coding upstream 653720 10425740 ~ 10439871 (-)
si:dkey-246g23.4 NA coding upstream 676966 10448986 ~ 10453158 (-)
kcng4a kcng4,kcng4a,LOC107553964,LOC107738382,LOC107749318,LOC107670163,LOC107684667 coding upstream 705166 10477186 ~ 10505123 (-)
G96677 hipk2 non-coding downstream 246941 9417586 ~ 9503941 (-)
G96679 NA non-coding downstream 333468 9417022 ~ 9417414 (-)
G96484 NA non-coding downstream 412098 9326681 ~ 9338784 (-)
G96421 NA non-coding downstream 664211 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 988286 8754558 ~ 8762596 (-)
G96840 NA non-coding upstream 47367 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 299533 10071553 ~ 10095358 (-)
G97172 NA non-coding upstream 597243 10369263 ~ 10370417 (-)
G97173 NA non-coding upstream 598728 10370748 ~ 10371325 (-)
G97204 NA non-coding upstream 707047 10479067 ~ 10479287 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 535067 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 1272545 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 2056455 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2593394 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 3469352 6197243 ~ 6281530 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 50213 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 494958 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 755090 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1400667 11172687 ~ 11179608 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 1814037 11586057 ~ 11610964 (-)

Expression


Co-expression Network