LOC113534306 (LOC108264223)


Basic Information

Item Value
gene id LOC113534306
gene name LOC108264223
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9205345 ~ 9210930 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304957.1
ttAGCCGTTAGCGTTAGCCTTATCCCAGGCTGAACCCCTGATGGTTCCACGGTGGATATAAAGTGCACTAGGTAGCAAGTGGGAGCCGGTATTTCCTGCCCTGTGTAGTGTATTTGTGTAGGGAGCAGCGAGACATTTGTATTTCAGCCTCCATCTTTCATGACTGTATAAgCTGTCTGGACTTGCCCGTACATGTCCACCGgaaatgaatattcatgagggCAGAGCGCGAGGCAGTGGACACTATAGCAACAGTATAGCAACATCCCGGATGGAGACATTAAACCCAGTCCTGCGGTGTGAGAGAAAACTTCACAGATAGTGAGCagtaaaatatgtgtgtgatataatgTTTGAGTTATTCTGGGATGGACGAAAGTTTGTGGTGCGAGAAAACTTCCTCCAGCGTCATATCTCCTTTACCATTGTGGATAATTGAATATGCCTGGACTAACAGGATGATGGAGGTGTTACAAGTTTTAGGCCCCCCGCTGTGGCTGGAAGGTGACCGGAGCAGCCTGACTCTTAAGGATCCATGCAGCATCCGTGTGACTGCGGCCGAGTCCTGGATGATCATCCGGTCCAGAGACATCGAACACTTTGAGCAAGTCATGGAGTTCCTGGATGTTACTCACACTTTACTACCTCAGCTAGTGACCCCCATCAAGCACATGAAGATAATGTTCGGCCTGAAAACGTTGGTTATTATGTGGATGGTGTGGGATGACCAGAGCGTAGAAAGCATTACAGACAAGATTGTAAAGTTCTTTCCTGACAGCCTCCCACAGTATCATCGTAGAAGTAGTCACAGGCATATGGAGCTGATGCAGAAGGCCCAGCGGGACTTTAGGAATTTTGCTCAGTTACTGACAAGAAACCCAGAAATGCGCAAAAACTATATTAGAAATCTGATGGAAGAGCAGTACGGTGAACGCTACATAATGAAGTTGGAAGAGAGATTGTTACATTATTTAGAAGAGCTGAACAAAGCTCTTCCACAACCCACCTACATTGACCAGGTTCTAAAGCAGTCAGTGCCACTGAAGGGGAGAGAGGAGTTACTGCAGCAGTTATTTACCTGTAATAGTGCGTCTCCAGCCACAGCTCTAAAGAAACTGCTGAGATGTGCTATGGCAAGCTGCATAGATCGTAGAAGTACAGAGATTTGTAAGCAACAGAAAGGAGCTCAAGTTGATGGACCAGTGTTTGGGCGTCTTTGTGTAGCTGTTAGACCACCTGTGGAAGAGGCAGAGGAAGATTGGCTGTCCCAGGCATCCTCTCAGAGCTCCTGGCTGAATAGAGATAAGAGTGTGGAAAAACAGATGACAAGGTTAAAGAAGAAGGGTGTTTTAGATCAGACTGACAAACATCCATGTGTACTTAAAGAACGGTGTGCTCAAACAACTGAGACTGGACTTGTTACTGAAGAgaagaaagctgaagatgacTTAACAGAGCATCTGTGCTCCAGACATGGCAAGAGAATGAAGAGTATCCTCCAAGAATGCTCCGAGGAGCTGAGGAGTCAGGACGGTGAAACTTCACTGATGCAGGTGGAATGCACTCCTATATCACCTCACCGTCCACTTCTCCAGTCCACGCCTCACAAACTGACCTCAGCATCTCCTCTCCATGACTCATCTTCTACAAATATTTCTCAGTCTTCACAGCCAGAGTCTTTCTCATATCTTTCAGTGGATGAAGAGGTTGTTCTTCCACAACTGATGGCTTATTCGCAGACATCTTCACCACAAGAAAATAATTCTAGTCGCTTCTCAGGCCAAAAATGTAGCACTGCATTGACATTACAAGTATCACATTCTTCAGAATATTCAGTACAGCTAGTCACCCCTTCACCACCATCTTCAGTTCAGCCATCCTTATCTCAAACATCTTCATCTTCAACCAATATTTCACCATTTCCAGAAAAGAATATCACACAAATATCATCCTCGACTGAGCAGGAATCCTCAGCGATGCTGCCCTTAAAGAAAATGTGTCCAGAAACTTCACACCATCAGCCTggtttatcatcatcatcatcatcatcatccttcgCAGCTCCAGCAGTGACTCTAACTCCAAGCCAAAATGATGCACAGGTCTCTTTAGATTCACGTGTAATTTTAGAGTCAAGCAGTGCCTTACCAGGCAAACCCAGGCTGTCTTTAGAGACTCAGGCTTTCCTTTTGGTGTGTAAGTGGCTGCAGCCTGAAGTGAAGCTCTGCAGACTGAGCCAGCATGAGTGTCATCAAGCCACACTGCCAAATCATTCTCCAGAGCAGTCAtctgaagaggaagaggaaaaggtaGATGAAGAAGATGTGTTGTTCGATGTCAATTTACTGTATTCAGACTCTGAATCAGACACACAAGACTCTGATGATTCTGATTATGTTCCGTCAAAGAGATGCAGGTATAGGTGAAGTGCAAATCTAGTGACTGTTGCTCATCATGCGCAATTATTGATCATTAACCAGACTTCTGTGGTGCTCTCCATTTTAATAATGCTGCTCCTCAAACTGCAGACCTGGGTCATAAATTACATTTGATGTTATTTTTAGATGTATAGATCTGGAAAAAGAACAGTGTTCAAACAGGCAAttgtatacattttaatatgaagACAACTTGATgtggtttttttaaatacctcagaaatatttatttatttaattcttagaacattttgacattttattatatgttttttcctGTGAAAGATAAATGATGAAACACCTTTGTAAGTCTTTGTGAGTTAATAAAACTTTCCACTTGA
>XM_034304958.1
ttAGCCGTTAGCGTTAGCCTTATCCCAGGCTGAACCCCTGATGGTTCCACGGTGGATATAAAGTGCACTAGGTAGCAAGTGGGAGCCGGTATTTCCTGCCCTGTGTAGTGTATTTGTGTAGGGAGCAGCGAGACATTTGTATTTCAGCCTCCATCTTTCATGACTGTATAAgCTGTCTGGACTTGCCCGTACATGTCCACCGgaaatgaatattcatgagggCAGAGCGCGAGGCAGTGGACACTATAGCAACAGTATAGCAACATCCCGGATGGAGACATTAAACCCAGTCCTGCGGTGTGAGAGAAAACTTCACAGATAGTGAGCagtaaaatatgtgtgtgatataatgTTTGAGTTATTCTGGGATGGACGAAAGTTTGTGGTGCGAGAAAACTTCCTCCAGCGTCATATCTCCTTTACCATTGTGGATAATTGAATATGCCTGGACTAACAGGATGATGGAGGTGTTACAAGTTTTAGGCCCCCCGCTGTGGCTGGAAGGTGACCGGAGCAGCCTGACTCTTAAGGATCCATGCAGCATCCGTGTGACTGCGGCCGAGTCCTGGATGATCATCCGGTCCAGAGACATCGAACACTTTGAGCAAGTCATGGAGTTCCTGGATGTTACTCACACTTTACTACCTCAGCTAGTGACCCCCATCAAGCACATGAAGATAATGTTCGGCCTGAAAACGTTGGTTATTATGTGGATGGTGTGGGATGACCAGAGCGTAGAAAGCATTACAGACAAGATTGTAAAGTTCTTTCCTGACAGCCTCCCACAGTATCATCGTAGAAGTAGTCACAGGCATATGGAGCTGATGCAGAAGGCCCAGCGGGACTTTAGGAATTTTGCTCAGTTACTGACAAGAAACCCAGAAATGCGCAAAAACTATATTAGAAATCTGATGGAAGAGCAGTACGGTGAACGCTACATAATGAAGTTGGAAGAGAGATTGTTACATTATTTAGAAGAGCTGAACAAAGCTCTTCCACAACCCACCTACATTGACCAGGTTCTAAAGCAGTCAGTGCCACTGAAGGGGAGAGAGGAGTTACTGCAGCAGTTATTTACCTGTAATAGTGCGTCTCCAGCCACAGCTCTAAAGAAACTGCTGAGATGTGCTGTTAGACCACCTGTGGAAGAGGCAGAGGAAGATTGGCTGTCCCAGGCATCCTCTCAGAGCTCCTGGCTGAATAGAGATAAGAGTGTGGAAAAACAGATGACAAGGTTAAAGAAGAAGGGTGTTTTAGATCAGACTGACAAACATCCATGTGTACTTAAAGAACGGTGTGCTCAAACAACTGAGACTGGACTTGTTACTGAAGAgaagaaagctgaagatgacTTAACAGAGCATCTGTGCTCCAGACATGGCAAGAGAATGAAGAGTATCCTCCAAGAATGCTCCGAGGAGCTGAGGAGTCAGGACGGTGAAACTTCACTGATGCAGGTGGAATGCACTCCTATATCACCTCACCGTCCACTTCTCCAGTCCACGCCTCACAAACTGACCTCAGCATCTCCTCTCCATGACTCATCTTCTACAAATATTTCTCAGTCTTCACAGCCAGAGTCTTTCTCATATCTTTCAGTGGATGAAGAGGTTGTTCTTCCACAACTGATGGCTTATTCGCAGACATCTTCACCACAAGAAAATAATTCTAGTCGCTTCTCAGGCCAAAAATGTAGCACTGCATTGACATTACAAGTATCACATTCTTCAGAATATTCAGTACAGCTAGTCACCCCTTCACCACCATCTTCAGTTCAGCCATCCTTATCTCAAACATCTTCATCTTCAACCAATATTTCACCATTTCCAGAAAAGAATATCACACAAATATCATCCTCGACTGAGCAGGAATCCTCAGCGATGCTGCCCTTAAAGAAAATGTGTCCAGAAACTTCACACCATCAGCCTggtttatcatcatcatcatcatcatcatccttcgCAGCTCCAGCAGTGACTCTAACTCCAAGCCAAAATGATGCACAGGTCTCTTTAGATTCACGTGTAATTTTAGAGTCAAGCAGTGCCTTACCAGGCAAACCCAGGCTGTCTTTAGAGACTCAGGCTTTCCTTTTGGTGTGTAAGTGGCTGCAGCCTGAAGTGAAGCTCTGCAGACTGAGCCAGCATGAGTGTCATCAAGCCACACTGCCAAATCATTCTCCAGAGCAGTCAtctgaagaggaagaggaaaaggtaGATGAAGAAGATGTGTTGTTCGATGTCAATTTACTGTATTCAGACTCTGAATCAGACACACAAGACTCTGATGATTCTGATTATGTTCCGTCAAAGAGATGCAGGTATAGGTGAAGTGCAAATCTAGTGACTGTTGCTCATCATGCGCAATTATTGATCATTAACCAGACTTCTGTGGTGCTCTCCATTTTAATAATGCTGCTCCTCAAACTGCAGACCTGGGTCATAAATTACATTTGATGTTATTTTTAGATGTATAGATCTGGAAAAAGAACAGTGTTCAAACAGGCAAttgtatacattttaatatgaagACAACTTGATgtggtttttttaaatacctcagaaatatttatttatttaattcttagaacattttgacattttattatatgttttttcctGTGAAAGATAAATGATGAAACACCTTTGTAAGTCTTTGTGAGTTAATAAAACTTTCCACTTGA
>XM_034304959.1
ttAGCCGTTAGCGTTAGCCTTATCCCAGGCTGAACCCCTGATGGTTCCACGGTGGATATAAAGTGCACTAGGTAGCAAGTGGGAGCCGGTATTTCCTGCCCTGTGTAGTGTATTTGTGTAGGGAGCAGCGAGACATTTGTATTTCAGCCTCCATCTTTCATGACTGTATAAgCTGTCTGGACTTGCCCGTACATGTCCACCGgaaatgaatattcatgagggCAGAGCGCGAGGCAGTGGACACTATAGCAACAGTATAGCAACATCCCGGATGGAGACATTAAACCCAGTCCTGCGGTGTGAGAGAAAACTTCACAGATAGTGAGCagtaaaatatgtgtgtgatataatgTTTGAGTTATTCTGGGATGGACGAAAGTTTGTGGTGCGAGAAAACTTCCTCCAGCGTCATATCTCCTTTACCATTGTGGATAATTGAATATGCCTGGACTAACAGGATGATGGAGGTGTTACAAGTTTTAGGCCCCCCGCTGTGGCTGGAAGGTGACCGGAGCAGCCTGACTCTTAAGGATCCATGCAGCATCCGTGTGACTGCGGCCGAGTCCTGGATGATCATCCGGTCCAGAGACATCGAACACTTTGAGCAAGTCATGGAGTTCCTGGATGTTACTCACACTTTACTACCTCAGCTAGTGACCCCCATCAAGCACATGAAGATAATGTTCGGCCTGAAAACGTTATTATGTGGATGGTGTGGGATGACCAGAGCGTAGAAAGCATTACAGACAAGATTGTAAAGTTCTTTCCTGACAGCCTCCCACAGTATCATCGTAGAAGTAGTCACAGGCATATGGAGCTGATGCAGAAGGCCCAGCGGGACTTTAGGAATTTTGCTCAGTTACTGACAAGAAACCCAGAAATGCGCAAAAACTATATTAGAAATCTGATGGAAGAGCAGTACGGTGAACGCTACATAATGAAGTTGGAAGAGAGATTGTTACATTATTTAGAAGAGCTGAACAAAGCTCTTCCACAACCCACCTACATTGACCAGGTTCTAAAGCAGTCAGTGCCACTGAAGGGGAGAGAGGAGTTACTGCAGCAGTTATTTACCTGTAATAGTGCGTCTCCAGCCACAGCTCTAAAGAAACTGCTGAGATGTGCTATGGCAAGCTGCATAGATCGTAGAAGTACAGAGATTTGTAAGCAACAGAAAGGAGCTCAAGTTGATGGACCAGTGTTTGGGCGTCTTTGTGTAGCTGTTAGACCACCTGTGGAAGAGGCAGAGGAAGATTGGCTGTCCCAGGCATCCTCTCAGAGCTCCTGGCTGAATAGAGATAAGAGTGTGGAAAAACAGATGACAAGGTTAAAGAAGAAGGGTGTTTTAGATCAGACTGACAAACATCCATGTGTACTTAAAGAACGGTGTGCTCAAACAACTGAGACTGGACTTGTTACTGAAGAgaagaaagctgaagatgacTTAACAGAGCATCTGTGCTCCAGACATGGCAAGAGAATGAAGAGTATCCTCCAAGAATGCTCCGAGGAGCTGAGGAGTCAGGACGGTGAAACTTCACTGATGCAGGTGGAATGCACTCCTATATCACCTCACCGTCCACTTCTCCAGTCCACGCCTCACAAACTGACCTCAGCATCTCCTCTCCATGACTCATCTTCTACAAATATTTCTCAGTCTTCACAGCCAGAGTCTTTCTCATATCTTTCAGTGGATGAAGAGGTTGTTCTTCCACAACTGATGGCTTATTCGCAGACATCTTCACCACAAGAAAATAATTCTAGTCGCTTCTCAGGCCAAAAATGTAGCACTGCATTGACATTACAAGTATCACATTCTTCAGAATATTCAGTACAGCTAGTCACCCCTTCACCACCATCTTCAGTTCAGCCATCCTTATCTCAAACATCTTCATCTTCAACCAATATTTCACCATTTCCAGAAAAGAATATCACACAAATATCATCCTCGACTGAGCAGGAATCCTCAGCGATGCTGCCCTTAAAGAAAATGTGTCCAGAAACTTCACACCATCAGCCTggtttatcatcatcatcatcatcatcatccttcgCAGCTCCAGCAGTGACTCTAACTCCAAGCCAAAATGATGCACAGGTCTCTTTAGATTCACGTGTAATTTTAGAGTCAAGCAGTGCCTTACCAGGCAAACCCAGGCTGTCTTTAGAGACTCAGGCTTTCCTTTTGGTGTGTAAGTGGCTGCAGCCTGAAGTGAAGCTCTGCAGACTGAGCCAGCATGAGTGTCATCAAGCCACACTGCCAAATCATTCTCCAGAGCAGTCAtctgaagaggaagaggaaaaggtaGATGAAGAAGATGTGTTGTTCGATGTCAATTTACTGTATTCAGACTCTGAATCAGACACACAAGACTCTGATGATTCTGATTATGTTCCGTCAAAGAGATGCAGGTATAGGTGAAGTGCAAATCTAGTGACTGTTGCTCATCATGCGCAATTATTGATCATTAACCAGACTTCTGTGGTGCTCTCCATTTTAATAATGCTGCTCCTCAAACTGCAGACCTGGGTCATAAATTACATTTGATGTTATTTTTAGATGTATAGATCTGGAAAAAGAACAGTGTTCAAACAGGCAAttgtatacattttaatatgaagACAACTTGATgtggtttttttaaatacctcagaaatatttatttatttaattcttagaacattttgacattttattatatgttttttcctGTGAAAGATAAATGATGAAACACCTTTGTAAGTCTTTGTGAGTTAATAAAACTTTCCACTTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264223 isoform X1

GO: NA

KEGG:

id description
K11112 TINF2, TIN2; TERF1-interacting nuclear factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304957.1 True 2779 mRNA 0.43 8 9205345 9210930
XM_034304958.1 False 2683 mRNA 0.43 8 9205345 9210930
XM_034304959.1 False 2775 mRNA 0.43 8 9205345 9210930

Neighbor

gene id symbol gene type direction distance location
tat tat,LOC106573680 coding downstream 3528 9193351 ~ 9201817 (-)
zgc:56622 LOC108264227,LOC108411019 coding downstream 14273 9186380 ~ 9191072 (-)
meak7 tldc1,LOC104945682 coding downstream 37071 9162522 ~ 9168274 (-)
plcg2 plcg2 coding downstream 43515 9134196 ~ 9161830 (-)
tmem243a LOC108264233 coding downstream 122736 9080039 ~ 9082609 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding upstream 6314 9217244 ~ 9220204 (-)
tbxas1 tbxas1 coding upstream 138961 9349891 ~ 9414387 (-)
fgd4a fgd4 coding upstream 414133 9625063 ~ 9692085 (-)
bicd1a bicd1,LOC107722484 coding upstream 483147 9694077 ~ 9732778 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding upstream 786883 9997813 ~ 10018683 (-)
G96421 NA non-coding downstream 118674 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 442749 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 575222 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 592331 8612815 ~ 8613014 (-)
LOC113534629 NA non-coding downstream 860687 8326831 ~ 8344658 (-)
G96484 NA non-coding upstream 115751 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 206092 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 206656 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 608457 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 860623 10071553 ~ 10095358 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 727008 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1510918 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2047857 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2923815 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 3418914 5713843 ~ 5786431 (-)
LOC113534661 NA other upstream 539952 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 611303 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1056048 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1316180 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1961757 11172687 ~ 11179608 (-)

Expression


Co-expression Network