G96679


Basic Information

Item Value
gene id G96679
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9417022 ~ 9417414 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU114736
CTCTCCGAGATCAGGATTTCTTACCTTCGTATACAGGGGCCATCGGTGCAAGGGTTTCTGCTATTCATGGCAAAAATGGGAAGAGATGCTTCAGTTCAGAACTCAGTAAAAAATCTGCCATCTTGCGCCTCTGACAGAATCGCTGTCTCCCACATTACTGAGCCAGATCATCGggggagagaagagaagacagagagagagagaggtagagagagagagagatagatagagagaagaATCACATCCACAACTGCAACTGGAATAGCCGGGTTGCCAAACAGCGATCCCCTGCAACTTCGCCTGAGCGGATCAGAGCAGTTGTTTGGCTCCGACACTGAGGCGGACTGCAGCCTGGGGCTTCAGTGTGCACTGGCCATGTCTGCGGAGTGCCTG

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU114736 True 393 lncRNA 0.52 1 9417022 9417414

Neighbor

gene id symbol gene type direction distance location
tbxas1 tbxas1 coding downstream 2635 9349891 ~ 9414387 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding downstream 196818 9217244 ~ 9220204 (-)
LOC113534306 LOC108264223 coding downstream 206092 9205345 ~ 9210930 (-)
tat tat,LOC106573680 coding downstream 215205 9193351 ~ 9201817 (-)
zgc:56622 LOC108264227,LOC108411019 coding downstream 225950 9186380 ~ 9191072 (-)
fgd4a fgd4 coding upstream 207649 9625063 ~ 9692085 (-)
bicd1a bicd1,LOC107722484 coding upstream 276663 9694077 ~ 9732778 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding upstream 580399 9997813 ~ 10018683 (-)
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding upstream 878437 10295851 ~ 10398875 (-)
wfdc1 wfdc1,LOC102778323,LOC107553961 coding upstream 1008326 10425740 ~ 10439871 (-)
G96484 NA non-coding downstream 78238 9326681 ~ 9338784 (-)
G96421 NA non-coding downstream 330351 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 654426 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 786899 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 804008 8612815 ~ 8613014 (-)
G96677 hipk2 non-coding upstream 172 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 401973 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 654139 10071553 ~ 10095358 (-)
G97172 NA non-coding upstream 951849 10369263 ~ 10370417 (-)
G97173 NA non-coding upstream 953334 10370748 ~ 10371325 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 201207 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 938685 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1722595 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2259534 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 3135492 6197243 ~ 6281530 (-)
LOC113534661 NA other upstream 333468 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 404819 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 849564 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1109696 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1755273 11172687 ~ 11179608 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_08308180_08308362 NA coding CI01000013 null 8307851 ~ 8309913 (-)