LOC113534821 (LOC108264660,LOC108443050)


Basic Information

Item Value
gene id LOC113534821
gene name LOC108264660,LOC108443050
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8395812 ~ 8478337 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU114124
CTTCAACAGAAAGATTATGGTGGCCCACTGGTGTGTCAGGAAAAGGACAGTAAGGTCATAGTGGGAGTGAGTATCCATGGCAGAGGATGTGCCCGACACAACCGGCCAGGTATCTTCGTCAGCGTGGCCCAGTATACAGGCTGGATCCACAAGGTGTTCAAAACGTACCCATATTCAGACTATAATTATTAAAGCTGAGCTTCAATAAGAGAGGACCTGGAACTGAGCAGTCCTGAGGATCCTAAACATTGGAGACAAAATCAAGGTGACCCACATTAGTGACTTCACAACTTGCACGTACATTCAAAGTTGACGAAAACTGTGtccaaaaatgtgaaaactggGACAACATCTGAAAATAGAACCTGACTATGTTCTGATTTCATGAAGAAGTGAGGGTGATATGGCTGGATTTCATTCAATTCCATGTGTATTATTGTAAAAGTTGAAAGAAAAGGTACGAAGGCCAGCTACCTAAACCCTGATCAAGGACATGCTTTGTAACTCTTTATATGAATTGTGGAAACTGTTATAAATTTGAAAGCGCAAGAccatgtttggggaaaaaaagttccCAAAATCTGTGGATGATTTGTGAATGTTGTGTACACTAGAACTGTAGAAAGAAGAGCAGAGAAACTGTCTCTCTGAGAATTTATTTAGATTATAAGGAAAGATAAGGATCTGCATCTAGTGACTGTAGCGACTGTAGAAACTTCGGCCCACACTATtaagaaaatattctttctttttttgtcaaacaAATATATGGACAGATTTGTCGATTTACACAATTATATTGTACATCATGGCTCCAAACATACCCTGCAGTATTATACGTTACAGAAaggtgtgtacagtatatgtgtaaaatatgtgtatagtagtattaatagctttaaaggctttttttattatttttttttacttttatgctcCTGATAATACTTGAATACACACATCCAACTAAACACTGTCAGCTCCAATAGCACTTCCTCATGTCATGTATTGAAGGTTCAGTTTGCTTTATGCAGGTGTGTACGTCATGCTCAGTGAACTctgtagctgttataacatgTTAATATATCCCCAACATATGCTGTGTTTGAATTATTATCAGAAGCCATAGAAGGGTTATGTGTTGTAAATACTGTAGTCATCACTCCCGATGCTTGGGTAGGTCTCATAGACCTTTTATGGTGGTTGTAAAATattatgggtttttttgtgtgtgtgtgtttttttttttttttttcttggcataATCTTGATCACTAGACATTATTGCCAATAAAAATGTTGAAAGCAAGCTGGGATCAAAAAGAGAGTAGATGCTAAATTTAGTTCTGTTTTGTAGTTATTATCAGTTGACCTCCTCAAGACTGTGTtggaccatgtgtgtgtgtgtgtgtgtgtgtttgtgtgtg
>TU114125
CCGAGCGCGCgcctcatcatcaccaccaccaccaccaccatcatcatcatcatcattatcctcctcatcatcatcatcatctccagcCTCCGCTCAGTGGACATCACGGCCAGCAGCTCGGCTCCTGTCTGAGCTTCAGCGCGCAAAACACTTCGTCATTTCTCCTCTCAGCAGCCTCGATCACAGCATTCCCTTCTACACCATGTGGATTTATAAGCTCCTGCTTTGCCTTTCTGTCCTGCTTTACTCGGAAAGCAAGAGGCATGCGCTTCAGGACTACCAGAAGACTGACGGGGTTCGTCTGGTCGCTCCACCTGACTCCTCCTACATGATGAAAAGCAAGAAGATGAGCTTGGGGAAGTGTGTGCGACGCTGCAGCCGCAACAGAAAACTCCCCTTCACCTGCAGAGCTTTCATCTTTGATCAGAATGGCACAAAGTGTCATTTACTCTCCTTCGACAGCCTCACAGTGGGCGTCCATGCTGAGACTGACTTCAGCTTTGACCTTTACgaaaaaaaagACTTTGTAAGGGAGTGCATCATCGGCACAGGTCTAAATTACAAAGGGAGGAGATCAGTGACCGAGAGTGGTGTTGAGTGCCAGAACTGGGATATGAACACGCCACATGAACATCACTTCTTACCCCGGCGACATAAGCAGAAGGACCTTCGGGGAAACTTGTGCCGGAACCCAGACAATAGCACTACAGGACCGTGGTGCTTTACCAAGAACCCCAGCATACGTTATCAAAACTGCAACATTCCCCAGTGCTCACAAGTGGAATGTATGATGTGTAATGGAGAAAGCTACCGCGGGCCCATGGACCACACGGAGAGTGGCAGAGAGTGCCAGCGCTGGGACTTAGATGAACCTCACAAACATCTCTTCCATCCCAAAAGGTACCCAGATAAAGGACTTAAGGATAACTACTGCAGGAACCCAGACGGACGCCAGAGGCCCTGGTGCTTCACCACCGATCCTGACACTCCGTGGGAGTACTGTGATGTCAAACAGTGTGAATCTGACAGCCACAGTGATGTTGAAACGACTACGACGTGTTTCCGGGGGAATGGGGAAGGATATCGTGGGACGGTGTCAGCCCCCAAGGATGGTTTGACTTGTCAAAGATGGGATGCCCAGTTTCCTCATTCGCACTCCTTCACACCGCAGAAATACCGCTGCAAG
>XM_026927789.2
TTGTGCCTGCGATAAAGGGGGCTTTCCTCATCCTGCACGCTGGGATCGCTTTAAATGGCTGATGGAGTAAGAGGGGAGGGATAACGGAGCTGTGTAGGACTCCGAGCGCGCgcctcatcatcaccaccaccaccaccaccatcatcatcatcatcattatcctcctcatcatcatcatcatctccagcCTCCGCTCAGTGGACATCACGGCCAGCAGCTCGGCTCCTGTCTGAGCTTCAGCGCGCAAAACACTTCGTCATTTCTCCTCTCAGCAGCCTCGATCACAGCATTCCCTTCTACACCATGTGGATTTATAAGCTCCTGCTTTGCCTTTCTGTCCTGCTTTACTCGGAAAGCAAGAGGCATGCGCTTCAGGACTACCAGAAGACTGACGGGGTTCGTCTGGTCGCTCCACCTGACTCCTCCTACATGATGAAAAGCAAGAAGATGAGCTTGGGGAAGTGTGTGCGACGCTGCAGCCGCAACAGAAAACTCCCCTTCACCTGCAGAGCTTTCATCTTTGATCAGAATGGCACAAAGTGTCATTTACTCTCCTTCGACAGCCTCACAGTGGGCGTCCATGCTGAGACTGACTTCAGCTTTGACCTTTACgaaaaaaaagACTTTGTAAGGGAGTGCATCATCGGCACAGGTCTAAATTACAAAGGGAGGAGATCAGTGACCGAGAGTGGTGTTGAGTGCCAGAACTGGGATATGAACACGCCACATGAACATCACTTCTTACCCCGGCGACATAAGCAGAAGGACCTTCGGGGAAACTTGTGCCGGAACCCAGACAATAGCACTACAGGACCGTGGTGCTTTACCAAGAACCCCAGCATACGTTATCAAAACTGCAACATTCCCCAGTGCTCACAAGTGGAATGTATGATGTGTAATGGAGAAAGCTACCGCGGGCCCATGGACCACACGGAGAGTGGCAGAGAGTGCCAGCGCTGGGACTTAGATGAACCTCACAAACATCTCTTCCATCCCAAAAGGTACCCAGATAAAGGACTTAAGGATAACTACTGCAGGAACCCAGACGGACGCCAGAGGCCCTGGTGCTTCACCACCGATCCTGACACTCCGTGGGAGTACTGTGATGTCAAACAGTGTGAATCTGACAGCCACAGTGATGTTGAAACGACTACGACGTGTTTCCGGGGGAATGGGGAAGGATATCGTGGGACGGTGTCAGCCCCCAAGGATGGTTTGACTTGTCAAAGATGGGATGCCCAGTTTCCTCATTCGCACTCCTTCACACCGCAGAAATACCGCTGCAAGGACCTGAGGGAGAACTACTGCAGGAATCCTGATGGCCGTGATGCCCCATGGTGCTTCACTACTGACCCTAATGTGCCTTGGGTCTTCTGCACGAGCATCCCAGGCTGTGAAGCAATAACAGCTGAACCTGACGAGTGTTATACAGGAATTGGTGAGATGTACAGAGGGAGGCAGATGAAGACTCGTTCAGGCTTCCCCTGTGCACCATGGCAGGACCATACTGAGAGGAAAGCACGAGACATGGTGACCCAGAGTGATGAACTGGAAGGCAGTTTCTGCAGGAATCCAGACAAGGACAAGCACGGGCCATGGTGCTACACCAATAGCTCCCTCGTCCCCTGGGATTACTGCACAGTCAAGCACTGTGAGCAATTACAGAACAGTCTACCACGAAAAGCTGAAGCCTCGGGCGTCTCCTGTTTTGTCCATAAGCAAGTGAGGATAGTGGGCGGCGGCCCCGTACCGATTAAAGAGGGCAGTTGGATGGTCAGCATTCAGAAAGGGGCTGCTCACTCATGCGGAGGCTCGCTGGTCCGTGAGGAGTGGGTGCTGACGGACAGAGAGTGCTTCTCCTCATGTGTTCCTGATCTGTCTGAGTACAGAGTGTGGCTTGGTTCTGCGCATCTGAATGAGTCTGGAGAGAACACTTGGACCAGGCAGGAAAGGAGGATTGCTCACGTCGTCTGTGGCCCAGAAGGCTCTGGACTCGCCCTGCTACAACTGGCACAGCCTGCTCTCATCACTGAGCATGTGCGGTTCATTCAGCTGCCTGTAGCTGGCTGTAGCATTGCAGAGGGCACCATGTGTTCAACGTACGGCTGGGGGGAAACTAAAGGCACAGGACATGAAGGCACACTAAAGAGTGTTCAGCTGCCCATTGTTAGCAATGAACGCTGCCAGCAGTTACACAGAGGAACGCTACAGATCACTGATGCTAAAGTGTGCGCTGGCGGGAAGAGAgatgaaggagtgtgtgagAAAGATTATGGTGGCCCACTGGTGTGTCAGGAAAAGGACAGTAAGGTCATAGTGGGAGTGAGTATCCATGGCAGAGGATGTGCCCGACACAACCGGCCAGGTATCTTCGTCAGCGTGGCCCAGTATACAGGCTGGATCCACAAGGTGTTCAAAACGTACCCATATTCAGACTATAATTATTAAAGCTGAGCTTCAATAAGAGAGGACCTGGAACTGAGCAGTCCTGAGGATCCTAAACATTGGAGACAAAATCAAGGTGACCCACATTAGTGACTTCACAACTTGCACGTACATTCAAAGTTGACGAAAACTGTGtccaaaaatgtgaaaactggGACAACATCTGAAAATAGAACCTGACTATGTTCTGATTTCATGAAGAAGTGAGGGTGATATGGCTGGATTTCATTCAATTCCATGTGTATTATTGTAAAAGTTGAAAGAAAAGGTACGAAGGCCAGCTACCTAAACCCTGATCAAGGACATGCTTTGTAACTCTTTATATGAATTGTGGAAACTGTTATAAATTTGAAAGCGCAAGAccatgtttggggaaaaaaagttccCAAAATCTGTGGATGATTTGTGAATGTTGTGTACACTAGAACTGTAGAAAGAAGAGCAGAGAAACTGTCTCTCTGAGAATTTATTTAGATTATAAGGAAAGATAAGGATCTGCATCTAGTGACTGTAGCGACTGTAGAAACTTCGGCCCACACTATtaagaaaatattctttctttttttgtcaaacaAATATATGGACAGATTTGTCGATTTACACAATTATATTGTACATCATGGCTCCAAACATACCCTGCAGTATTATACGTTACAGAAaggtgtgtacagtatatgtgtaaaatatgtgtatagtagtattaatagctttaaaggctttttttattatttttttttacttttatgctcCTGATAATACTTGAATACACACATCCAACTAAACACTGTCAGCTCCAATAGCACTTCCTCATGTCATGTATTGAAGGTTCAGTTTGCTTTATGCAGGTGTGTACGTCATGCTCAGTGAACTctgtagctgttataacatgTTAATATATCCCCAACATATGCTGTGTTTGAATTATTATCAGAAGCCATAGAAGGGTTATGTGTTGTAAATACTGTAGTCATCACTCCCGATGCTTGGGTAGGTCTCATAGACCTTTTATGGTGGTTGTAAAATattatgggtttttttgtgtgtgtgtgtttttttttttttttttcttggcataATCTTGATCACTAGACATTATTGCCAATAAAAATGTTGAAAGCAAGCTGGGATCAAAAAGAGAGTAGATGCTAAATTTAGTTCTGTTTTGTAGTTATTATCAGTTGACCTCCTCAAGACTGTGTtggaccatgtgtgtgtgtgtgtgtttgtgtgtggcatAAATCAGTGTTGTTTGTCAGCCATGCTGCTGGCAGGATGCAGCTCTGCAGGacagagagtttgtgtgtgtgcatgttttatatcttggtcacaaggataggaatatttgACACTTTTGACCCAGTGGAAACACTAGGCAGGTCTCCACAAggatagaaatatctgacagttttgtccttgtggagacatttggctggtccccacaaggcaaacggtttattttatttttcaaaaactgcagcttCAACAGtctaaatgtttcattttggttactgaagttagggttagggtaagATCTAGGTGTAGGAATAGCATTAagtagctgcattaataattatgtcagtgggaGGTCCTCACAAGTATAATAtgacaaatgtgtgtatgtgtgtgtctccatgAACAAAGAAGCCAACATTAAGCTTCTTCAATCTAGTGGACAAACATGCCTAGTTAGGCTAGGCAAGAtattcattttttctgtttacataTTCCGGATTAGTTGTATGACAAAACCCATCCATCAAAGTCGATTCTTGTGTGTGGCCGTGGTTTGCTCTGAATGCAAGTTTTTCATTCCTGACCTCTCACTCTGGACTGCATCCAACAACAATCAGCTTGGAATATTACCCCCCAAACCATGTCAGCTTAAGCAAATACCACGCTGAAAGATGGCTCCTAAGTGCTTGCTTTCCAAGCACTCCTGATGCTCATTAATGTTGGTTTATATGAAAGATGACTTTAATTTGTATGAGTCCAAAGGCAGAGATCTTTATATTAAGCAATACTAGGAATTTTTAGCATGTGCTGAAACACAGTCAAGACAAACCATGTAAACATCTTACTCTGTGATAAatttatgattatatgatttatCTCTCTCCATATTTAGACCATAAGACTTGCTGATTGATTCCATATCAAACTATTGAGTTTTTCCGTGCAAATTTGGTATGTAATGTAGAATTATTTACACTGAGGTGACCTATACAAGTCAACCAGCTCTGCAGTTTTTATTAGgaattttatgttgtttattttatttttattttattttatttttttggtgtaCGTGTCACCTTTATGAATGTACAGTGCTGCTATTTACAATAGAAGGTTGTAAATGTCATCTGTGTACATACACTCCTAGTATGGAGACATGCATATTCAATGTATTATTCACCTGTATTGTATGGTTCATGCTGAATTACCTTGACAGCTGTATTTATCCGCTTACGTTGTGTGTTCATTAGGACTCCTTTATGTGCCTTTACCATGTTTACCATGTccgaaattaaaaataaaatatgat

Function

NR:

description
PREDICTED: hepatocyte growth factor-like

GO: NA

KEGG:

id description
K05460 HGF; hepatocyte growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
TU114124 False 1427 lncRNA 0.37 2 8395812 8454720
TU114125 False 1186 TUCP 0.52 8 8468301 8478236
XM_026927789.2 True 4990 mRNA 0.44 18 8451987 8478337

Neighbor

gene id symbol gene type direction distance location
lepa LOC100304688,LOC108442790 coding downstream 282719 8087436 ~ 8113093 (-)
prrt4 prrt4 coding downstream 334839 8045427 ~ 8060973 (-)
frmd4a frmd4a,si:ch211-220f12.1,LOC107559478 coding downstream 418895 7847835 ~ 7976917 (-)
bend7 bend7 coding downstream 566806 7818508 ~ 7829006 (-)
sephs1 sephs1,LOC107719963,LOC107671154 coding downstream 578215 7810212 ~ 7817597 (-)
LOC113534270 cacna2d1,LOC107672590,LOC107738419 coding upstream 14652 8492989 ~ 8594273 (-)
pclob LOC108264083,LOC107738431 coding upstream 129680 8608017 ~ 8687641 (-)
sema3e sema3e,LOC107563409,LOC107559846 coding upstream 224394 8702731 ~ 8742563 (-)
sema3ab sema3a,sema3ab,LOC108264812,LOC107665547,LOC107672583 coding upstream 299655 8777992 ~ 8841060 (-)
sema3d sema3d,LOC107563415 coding upstream 407891 8886228 ~ 8925270 (-)
LOC113534629 NA non-coding downstream 51154 8326831 ~ 8344658 (-)
G95907 NA non-coding downstream 312240 8080216 ~ 8083572 (-)
LOC117597532 NA non-coding downstream 379191 8014155 ~ 8016621 (-)
LOC117597533 NA non-coding downstream 382400 8009127 ~ 8013412 (-)
G95835 NA non-coding downstream 410882 7984714 ~ 7984930 (-)
G96166 NA non-coding upstream 134478 8612815 ~ 8613014 (-)
G96170 NA non-coding upstream 151563 8629900 ~ 8630123 (-)
G96220 NA non-coding upstream 276221 8754558 ~ 8762596 (-)
G96421 NA non-coding upstream 605990 9084327 ~ 9086671 (-)
G96484 NA non-coding upstream 848344 9326681 ~ 9338784 (-)
shank3a shank3,shank3a other downstream 701385 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 1238324 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2114282 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 2609381 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 2752863 5639696 ~ 5642949 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 696318 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 1272545 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 1343896 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1788641 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 2048773 10527110 ~ 10581902 (-)

Expression


Co-expression Network