LOC113534629


Basic Information

Item Value
gene id LOC113534629
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8326831 ~ 8344658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578351.1
ACTCACTTCCTGTCTAGCTGCTATACAAAGCACATGGACGTTTTGTAGATGTAAAGCTTTACAATTTGCCCTACACATTCAGtGTCTCTTCTACCACTTCTCCCTGACTCCAACTCGCTGCAGTATACAACCAGTAAAAGGGAGAAATCACGTTAGGAATGCCAAAAGACTGATGGTGAAAGTGATGAACGGAGATAAGGTTGAGgaggaaccacacacacagattgaaGAAGTGGCAAAGGCTGATGAAGCATGAGAGCTGAGTCATACAGCGAGACAGACTCGgttccagcatgataatgaccctgtgcacaaagcgaactccatgaagacatgttttgccagTGTTGAAGTGGAACAATTTGAGTAGCCTGACCTcagggatgaactggaacgctgactgcaccaccaggcctcctcgcccgacatcagtgcctgacctcactaatgctcctgtggctgaatgtgcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578351.1 True 472 lncRNA 0.47 3 8326831 8344658

Neighbor

gene id symbol gene type direction distance location
lepa LOC100304688,LOC108442790 coding downstream 213738 8087436 ~ 8113093 (-)
prrt4 prrt4 coding downstream 265858 8045427 ~ 8060973 (-)
frmd4a frmd4a,si:ch211-220f12.1,LOC107559478 coding downstream 349914 7847835 ~ 7976917 (-)
bend7 bend7 coding downstream 497825 7818508 ~ 7829006 (-)
sephs1 sephs1,LOC107719963,LOC107671154 coding downstream 509234 7810212 ~ 7817597 (-)
LOC113534270 cacna2d1,LOC107672590,LOC107738419 coding upstream 148331 8492989 ~ 8594273 (-)
pclob LOC108264083,LOC107738431 coding upstream 263359 8608017 ~ 8687641 (-)
sema3e sema3e,LOC107563409,LOC107559846 coding upstream 358073 8702731 ~ 8742563 (-)
sema3ab sema3a,sema3ab,LOC108264812,LOC107665547,LOC107672583 coding upstream 433334 8777992 ~ 8841060 (-)
sema3d sema3d,LOC107563415 coding upstream 541570 8886228 ~ 8925270 (-)
G95907 NA non-coding downstream 243259 8080216 ~ 8083572 (-)
LOC117597532 NA non-coding downstream 310210 8014155 ~ 8016621 (-)
LOC117597533 NA non-coding downstream 313419 8009127 ~ 8013412 (-)
G95835 NA non-coding downstream 341901 7984714 ~ 7984930 (-)
G95815 NA non-coding downstream 376869 7949762 ~ 7949962 (-)
G96166 NA non-coding upstream 268157 8612815 ~ 8613014 (-)
G96170 NA non-coding upstream 285242 8629900 ~ 8630123 (-)
G96220 NA non-coding upstream 409900 8754558 ~ 8762596 (-)
G96421 NA non-coding upstream 739669 9084327 ~ 9086671 (-)
G96484 NA non-coding upstream 982023 9326681 ~ 9338784 (-)
shank3a shank3,shank3a other downstream 632404 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 1169343 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2045301 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 2540400 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 2683882 5639696 ~ 5642949 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 51154 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 829997 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 1406224 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 1477575 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1922320 10266978 ~ 10294823 (-)

Expression


Co-expression Network