RNA id: XM_034304958.1


Basic Information

Item Value
RNA id XM_034304958.1
length 2683
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC113534306
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9205345 ~ 9210930 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttAGCCGTTAGCGTTAGCCTTATCCCAGGCTGAACCCCTGATGGTTCCACGGTGGATATAAAGTGCACTAGGTAGCAAGTGGGAGCCGGTATTTCCTGCCCTGTGTAGTGTATTTGTGTAGGGAGCAGCGAGACATTTGTATTTCAGCCTCCATCTTTCATGACTGTATAAgCTGTCTGGACTTGCCCGTACATGTCCACCGgaaatgaatattcatgagggCAGAGCGCGAGGCAGTGGACACTATAGCAACAGTATAGCAACATCCCGGATGGAGACATTAAACCCAGTCCTGCGGTGTGAGAGAAAACTTCACAGATAGTGAGCagtaaaatatgtgtgtgatataatgTTTGAGTTATTCTGGGATGGACGAAAGTTTGTGGTGCGAGAAAACTTCCTCCAGCGTCATATCTCCTTTACCATTGTGGATAATTGAATATGCCTGGACTAACAGGATGATGGAGGTGTTACAAGTTTTAGGCCCCCCGCTGTGGCTGGAAGGTGACCGGAGCAGCCTGACTCTTAAGGATCCATGCAGCATCCGTGTGACTGCGGCCGAGTCCTGGATGATCATCCGGTCCAGAGACATCGAACACTTTGAGCAAGTCATGGAGTTCCTGGATGTTACTCACACTTTACTACCTCAGCTAGTGACCCCCATCAAGCACATGAAGATAATGTTCGGCCTGAAAACGTTGGTTATTATGTGGATGGTGTGGGATGACCAGAGCGTAGAAAGCATTACAGACAAGATTGTAAAGTTCTTTCCTGACAGCCTCCCACAGTATCATCGTAGAAGTAGTCACAGGCATATGGAGCTGATGCAGAAGGCCCAGCGGGACTTTAGGAATTTTGCTCAGTTACTGACAAGAAACCCAGAAATGCGCAAAAACTATATTAGAAATCTGATGGAAGAGCAGTACGGTGAACGCTACATAATGAAGTTGGAAGAGAGATTGTTACATTATTTAGAAGAGCTGAACAAAGCTCTTCCACAACCCACCTACATTGACCAGGTTCTAAAGCAGTCAGTGCCACTGAAGGGGAGAGAGGAGTTACTGCAGCAGTTATTTACCTGTAATAGTGCGTCTCCAGCCACAGCTCTAAAGAAACTGCTGAGATGTGCTGTTAGACCACCTGTGGAAGAGGCAGAGGAAGATTGGCTGTCCCAGGCATCCTCTCAGAGCTCCTGGCTGAATAGAGATAAGAGTGTGGAAAAACAGATGACAAGGTTAAAGAAGAAGGGTGTTTTAGATCAGACTGACAAACATCCATGTGTACTTAAAGAACGGTGTGCTCAAACAACTGAGACTGGACTTGTTACTGAAGAgaagaaagctgaagatgacTTAACAGAGCATCTGTGCTCCAGACATGGCAAGAGAATGAAGAGTATCCTCCAAGAATGCTCCGAGGAGCTGAGGAGTCAGGACGGTGAAACTTCACTGATGCAGGTGGAATGCACTCCTATATCACCTCACCGTCCACTTCTCCAGTCCACGCCTCACAAACTGACCTCAGCATCTCCTCTCCATGACTCATCTTCTACAAATATTTCTCAGTCTTCACAGCCAGAGTCTTTCTCATATCTTTCAGTGGATGAAGAGGTTGTTCTTCCACAACTGATGGCTTATTCGCAGACATCTTCACCACAAGAAAATAATTCTAGTCGCTTCTCAGGCCAAAAATGTAGCACTGCATTGACATTACAAGTATCACATTCTTCAGAATATTCAGTACAGCTAGTCACCCCTTCACCACCATCTTCAGTTCAGCCATCCTTATCTCAAACATCTTCATCTTCAACCAATATTTCACCATTTCCAGAAAAGAATATCACACAAATATCATCCTCGACTGAGCAGGAATCCTCAGCGATGCTGCCCTTAAAGAAAATGTGTCCAGAAACTTCACACCATCAGCCTggtttatcatcatcatcatcatcatcatccttcgCAGCTCCAGCAGTGACTCTAACTCCAAGCCAAAATGATGCACAGGTCTCTTTAGATTCACGTGTAATTTTAGAGTCAAGCAGTGCCTTACCAGGCAAACCCAGGCTGTCTTTAGAGACTCAGGCTTTCCTTTTGGTGTGTAAGTGGCTGCAGCCTGAAGTGAAGCTCTGCAGACTGAGCCAGCATGAGTGTCATCAAGCCACACTGCCAAATCATTCTCCAGAGCAGTCAtctgaagaggaagaggaaaaggtaGATGAAGAAGATGTGTTGTTCGATGTCAATTTACTGTATTCAGACTCTGAATCAGACACACAAGACTCTGATGATTCTGATTATGTTCCGTCAAAGAGATGCAGGTATAGGTGAAGTGCAAATCTAGTGACTGTTGCTCATCATGCGCAATTATTGATCATTAACCAGACTTCTGTGGTGCTCTCCATTTTAATAATGCTGCTCCTCAAACTGCAGACCTGGGTCATAAATTACATTTGATGTTATTTTTAGATGTATAGATCTGGAAAAAGAACAGTGTTCAAACAGGCAAttgtatacattttaatatgaagACAACTTGATgtggtttttttaaatacctcagaaatatttatttatttaattcttagaacattttgacattttattatatgttttttcctGTGAAAGATAAATGATGAAACACCTTTGTAAGTCTTTGTGAGTTAATAAAACTTTCCACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114448 lncRNA downstream 118674 9084327 ~ 9086671 (-) True G96421
TU114213 lncRNA downstream 442749 8754558 ~ 8762596 (-) True G96220
TU114155 lncRNA downstream 575222 8629900 ~ 8630123 (-) True G96170
TU114151 lncRNA downstream 592331 8612815 ~ 8613014 (-) True G96166
TU114124 lncRNA downstream 750625 8395812 ~ 8454720 (-) False LOC113534821
TU114521 lncRNA upstream 115751 9326681 ~ 9338784 (-) True G96484
TU114736 lncRNA upstream 206092 9417022 ~ 9417414 (-) True G96679
TU114733 lncRNA upstream 206656 9417586 ~ 9503941 (-) False G96677
TU114732 lncRNA upstream 287375 9498305 ~ 9503941 (-) True G96677
TU114861 lncRNA upstream 539952 9750882 ~ 9772020 (-) False LOC113534661
XM_026926992.2 mRNA downstream 3528 9193351 ~ 9201817 (-) False tat
XM_026926993.2 mRNA downstream 3528 9193351 ~ 9201817 (-) True tat
XM_026927430.2 mRNA downstream 14273 9186380 ~ 9191072 (-) True zgc:56622
XM_026927586.2 mRNA downstream 25120 9174655 ~ 9180225 (-) True cotl1
XM_026926968.2 mRNA downstream 37071 9162522 ~ 9168274 (-) True meak7
XM_026927010.2 mRNA upstream 6314 9217244 ~ 9220204 (-) False LOC113534316
XM_026927009.2 mRNA upstream 6314 9217244 ~ 9220202 (-) True LOC113534316
XM_026927329.2 mRNA upstream 138961 9349891 ~ 9414387 (-) False tbxas1
XM_034305376.1 mRNA upstream 138961 9349891 ~ 9414140 (-) False tbxas1
XM_026927328.2 mRNA upstream 138961 9349891 ~ 9410543 (-) True tbxas1
TU114125 other downstream 727109 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 1591249 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 2047857 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 2340006 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 3011198 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 1057547 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 1057547 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 2377071 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 3101152 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 3186757 12397687 ~ 12405281 (-) False znf143b

Expression Profile