RNA id: XR_004578339.1


Basic Information

Item Value
RNA id XR_004578339.1
length 2082
RNA type misc_RNA
GC content 0.52
exon number 16
gene id arntl2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11586057 ~ 11610964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTGAGGGAATGGAGCGCGAGGGAGGCGGGCCCTGACTGCGGTGGGCGGAGCCACGAGCGTCTGCTTCCGCGTtccccctcctccccctcccCTCCGTGTCTCCAACCTCTGCGTCCTGCTTACGCCGCGCACCGGGGCTGCTCGTGTTCATGCCTGACGCTGCCTCTTCCGACTTATTTAGGtgacagaagaagaagcaaaaagTCAGCTGTACAAAGGTTCGCTGccctccctcctcccttctCTCACCCCCACCCTCTCCAGCGTTTATTACCGCCTACTCCTCCACATGCCTCCGAGTGCTGGGCCCCGGCGTACCGGCTCCAGCCATGTCGGCGAGCGAGGCAGCGGCTGCCGGCGGTGACAGAGCCCCCGGGGGAGAGACAGgagaTGTGTTGGAGGAGGGTCTCCAGagtcactctgtctctgtttccAGTCTGGTGACCCCCACTTCAGCTGCTGGCATGGCGTCCGGCATGGAGCTGCCCAGGAAACGTAAGGGCAGCACTgacaaGGAAACAAAATCTGCATCGATGCTGGATGAAGACATGGAGGATGAACAGGAAAGgtcAGAAGGGGATGATCCACATGTGAAAATTAAGTGTTTCAGGGAACCTCACAGCCAAATTGAAAAAAGGCGGCGGGACAAGATGAATAACCTGATCGACGAGCTGTCAGCCATGATTCCCACGTGTAACCCCATGTCCCGCAAGCTCGACAAACTCACTGTGCTGCGCATGGCTGTGCAACACCTCAAGTCACTCAAAGGTGCAACCAGCTCCTTTGCCGAGGCCAACTACAAGCCTTCATTCCTTCCTGATGATGAACTCAAGCACCTTGTTCTTAGGGCTGCGGATGGATTCCTGTTTGTGGTTGGATGTGACCGGGGGAAGATAGTATTTGTTTCAGAGTCTGTTTCAAAGATTCTGAACTACACTCggCCAGAGCTGATTGGCCAGAGTTTATTTGACTATGTTCATCCAAAGGACATAGGAAAAGTAAAGGAGCAGCTCTCAGCCTCTGAACTCTATCCACGAGAACGCCTTATAGACGCCAAAAcgGGACTCCAGGTGCAAGCTGATCTGCCTGTAGGAGCCACTCGACTCTGTTCAGGAGCTCGTCGCTCTTTTTTCTGCCGAATGAAGTGCAACAAAGTTGCTGTTAAAGAAGAAAAGGACTTCCAGCCCAGCTCATCAAAAAAGAAAGAATCACAGCGTTATTGCACCGTGCACTGCACCGGTTATATGCGCACTTGGCCCACCAGTCAGCTCGGAGCAGAGGGTGAGGCCGAGGCCGATAAGGAGAGCTCACACTTCAGCTGCCTTGTAGCCGTGGGCCGTGTGCACCCTCATACCATCCCCCAGGCCAACGGAGAGGTCAAGGTCAAGCCCACAGAGTTCATCACTCGCTGCGCCATGGATGGCAAATTCACATATGTGGATCAACGAGCCACCACCATACTTGGATATCTGCCACAGGAGCTGCTAGGCACATCCTGCTATGAATACTTTCATCAAGACGATTTGCCTCATTTAGCAGACAGACACCGAAAAGTGTTGAGAAGTAAAGAGAAGATCGAGACAAACTGCTACAAGTTCAAAACGAAATATGGCTCTTTTGTCACCTTGCAAAGTCAGTGGTTTAGTTTTATAAATCCCTGGACCAAAGAAGTAGAATATATAGTGTCAACAAACACAGTCATATCTGATAAGAGCAATCCCAGTGGATCAGGGGACAAGTCAGAACAGCCGATAGATTCCAAAACTTCGGAAGATGGCGGACATACACAATACAAGTTCATCTGTGTGTTGGAGAAATTTCCCTCTGAAGGCCGAGTGCAAAGATTGGACTGTAAAATACTTTTTCCACAGAAGAGGATGCGAAGAAATCCCTCCCCATCATCCCTGGCATCTCGAATGCTTCAGGCACCATGATCTATGCTGGAAGCATTGGAACACAAATAGCTAATGAGCTACTGGATTTTAATAGGATGAACTCTTCCCCATCCAGTGGCAATGCCAGCCCCTTCAGTCTGCTGCAGGACAAGTCTCCACTGGTTCTCGCTCAAGCCAGCAGCAAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116033 lncRNA downstream 110887 11396116 ~ 11477114 (-) True G97831
TU115775 lncRNA downstream 397161 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 399978 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 413828 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 413828 11173321 ~ 11174173 (-) False pdf
TU116158 lncRNA upstream 69765 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 80033 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 80033 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 141561 11752525 ~ 11753198 (-) False plekhg7
TU116261 lncRNA upstream 260015 11870979 ~ 11871109 (-) False sspn
XM_026927540.2 mRNA downstream 6117 11578245 ~ 11581884 (-) True si:ch211-245j22.3
XM_034305373.1 mRNA downstream 11013 11543660 ~ 11576988 (-) True ppfibp1b
XM_026927037.2 mRNA downstream 45620 11537242 ~ 11542381 (-) True endouc
XM_026927504.2 mRNA downstream 52337 11508775 ~ 11535664 (-) True polr3b
XM_034305557.1 mRNA downstream 81311 11489642 ~ 11506690 (-) False rfx4
XM_026927475.2 mRNA upstream 61417 11672381 ~ 11675853 (-) True si:ch211-219a15.3
XM_034305446.1 mRNA upstream 142138 11753102 ~ 11769985 (-) False plekhg7
XM_034305445.1 mRNA upstream 142138 11753102 ~ 11769985 (-) False plekhg7
XM_026927219.2 mRNA upstream 142138 11753102 ~ 11769985 (-) False plekhg7
XM_026927215.2 mRNA upstream 142138 11753102 ~ 11769985 (-) False plekhg7
XR_004578315.1 other downstream 1293178 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1293178 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 3109765 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3973905 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4430513 7147944 ~ 7157488 (-) False LOC113534453
TU116624 other upstream 701118 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 786723 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 810138 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1434859 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 1825937 13436901 ~ 13436975 (-) True LOC113534846

Expression Profile