RNA id: XM_026926993.2


Basic Information

Item Value
RNA id XM_026926993.2
length 2603
RNA type mRNA
GC content 0.44
exon number 12
gene id tat
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9193351 ~ 9201817 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTGGCGGCTGTCTATAAAACCGGCCACAATACTACACAACACATTTCAGTGCATAATTTATTCGTGTTCCTGTAGGGACAAGTTTTTTTAAGGATTCTTTTGAGGCACCTTTGAAAGtttgtttttcagagaaAATGTCACGTGTCGGGAAAATGAATGGAGTCTCACTGAACGGTTTTCACGGAGATGAGAAGTTCAAAGGCCACGGAATGAAGAACGGTGACAGTGTGAACGGAATGAACGGAAATGGTGTCACTGTTGTGAACGGGAGCGCGCGCGCTCCGTTCAGCCCCGTTAAAGGGAGAGCGCGCGGGCAGCGCTGGAGCGTGCGAGCGTCGGAGATGGCGAAGAACACACTCAATCCTATCCGCGCTATAGTCGACGGCATGAAGCTCACCCCGAACCCTGACAAGCCCATGATCGCCCTGTCCATCGGTGACCCTACAGTATTCGGAAACTTGCCTACAGATGAAAGTGTGCTACAGGCTGTGAAGAAAGCTGTAGATTCACACAAATACAGTGGCTATGCCCCTTCAGTAGGTTACCATAAGAGCAGAGAGGCTGTGGCAAACTTCTACAGCCAGTCAAGTGCTCCACTGGAAGCTAATGATGTAATTCTGACCAGTGGATGTAGCCAGGCTATCGAGTTGGCCATCAGTGTACTGTGTAATCCAGGAGACAACATCCTAGTTCCTTGCCCTGGATTCTCGCTCTACAAAACCCTGGCTGTGTCGATGGGCATCCAGGTCAAACTGTACAACCTACTGCCGGAGAAGTCCTGGGAGATTGATCTCCAACACTTGGAGAGTCTGATTGATGAGAGGACAACCTGTCTGATTGTCAACAACCCGTCCAACCCCTGTGGCTCTGTATTTACAAAAGGGCACCTGCAGAACATCCTCTCAGTTGCCTCAAAACACTGTGTCCCTATCCTGGCAGATGAGATCTATGGAGACATGGTCTTTCCCAACTGTGAGTTTCATGCCCTGGCTCCTCTCAGCAGTGACGTACCCATTCTGTCCTGTGGTGGTCTGGCTAAACGCTGGCTTGTTCCTGGATGGAGACTGGGCTGGATCCTCATCCACGATCGCAATAATATCTTCGGACGAGAGATTCGAGAAGGTCTTGTGAAGCTCAGTCAGCGCATTTTGGGAGCTTGTACAGTTATCCAGGGGGCGCTAGAAAGCATCTTTAAAAATACCCCCTCAGAGTTCTACCAAAGTACAATCAACTTTCTAAAGTCAAATGCAGATATTTGCTTCTCAGAGCTGTCCACTGTTCCTGGGCTCAATCCGGTAATGCCATCTGGAGCCATGTACCTCATgGTTGGAATTGAAATGGAGCACTTTCCAGAGTTCCAGGATGATGTGGAGTTCACAGAGAGGCTAGTTACTGAACAGTCTGTGTTCTGCTTACCTGCCACGGCATTTGAATACCCAAATTTCTTCCGGATTGTGGTGACGGTTCCAGAGGAAATGATGGTGGAAGCATGTGAACGGATCAGGGAATTCTGTGCACGCCACTACAGACCTCGCAGCCAAGACAGCAACGACCTGGACCAGTGAAGGGATGTTCGGTGAACAAgctagagagaaagagcaaacaATAAAGGGACACACGAAAGTGTATATGTAGTAGACAGGGAGATCCACTTCTAACGGTTTGAGTGAGGACTGATGTTTGTTCTTTGAAGGAGATAAAATATTTCTATGCACTAGTGATGACAGATATATGATATGGTCATGATAGGgaaggctaaaatctaatatctatcaatcgCTCAACAATGAACTATTAGGGCTGAgaaatgcattatatcacaaggtctgTATTAcaagatcacacacacagacacttaaaggcagatagGCATTTCTATTATTcctaattattcatttttaacaccCTACTTTGAATACCAAACATAATGGTAAACAGACAGTATGGTtttgtcatctgtccttttgtgtaatttgtacacTGATTGGACATCGTGGGCATAGTCTATCTAGTTTTAGAGTCTCCTGTGAAAGGCATACCATCAGAAAGACGATAGACcaaataatccacctcattcGCATTCATTACACCCACAACTGTatttctcaatcactgctgatgacataTTACAGATGTGTCAGTAGCACAGGCTggaaaatatcagcccaaattcACACTAGAAGAGGTTTCACTCTGAGTAATCACCTGACACttctgtcactgataggctacatgaatctacagtctgggctggaAATAAATCAGCCCCAGTGTCACCTTTTCATGTCGTTCTGTACTAATCGGTGATACTGTTGATCATGTTTTCACAAATGTCCAAAAATAATCTgccttaaaacatttgttaacagaaaacaatctgatgtggatgccaaaaatgactcattttattaatgtctttttaatcATTGAAAGACAGGGATGAGCTTAGCCCTGCTACCCCATTTATATTATGTAAGCTATGCATctattctatgttttttttatatggacCAGTAAACTGTCTTATGTAAATCTCGTGCTTATCACTTGTACACTGTAGTGATttcttttgtgtatgtgtatgattgATCTACTTCCAT

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004838 L-tyrosine molecular_function

KEGG:

id description
K00815 TAT; tyrosine aminotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114448 lncRNA downstream 106680 9084327 ~ 9086671 (-) True G96421
TU114213 lncRNA downstream 430755 8754558 ~ 8762596 (-) True G96220
TU114155 lncRNA downstream 563228 8629900 ~ 8630123 (-) True G96170
TU114151 lncRNA downstream 580337 8612815 ~ 8613014 (-) True G96166
TU114124 lncRNA downstream 738631 8395812 ~ 8454720 (-) False LOC113534821
TU114521 lncRNA upstream 124864 9326681 ~ 9338784 (-) True G96484
TU114736 lncRNA upstream 215205 9417022 ~ 9417414 (-) True G96679
TU114733 lncRNA upstream 215769 9417586 ~ 9503941 (-) False G96677
TU114732 lncRNA upstream 296488 9498305 ~ 9503941 (-) True G96677
TU114861 lncRNA upstream 549065 9750882 ~ 9772020 (-) False LOC113534661
XM_026927430.2 mRNA downstream 2279 9186380 ~ 9191072 (-) True zgc:56622
XM_026927586.2 mRNA downstream 13126 9174655 ~ 9180225 (-) True cotl1
XM_026926968.2 mRNA downstream 25077 9162522 ~ 9168274 (-) True meak7
XM_026927401.2 mRNA downstream 31521 9134196 ~ 9161830 (-) True plcg2
XM_034305452.1 mRNA downstream 110746 9080039 ~ 9082605 (-) False tmem243a
XM_034304959.1 mRNA upstream 3528 9205345 ~ 9210930 (-) False LOC113534306
XM_034304958.1 mRNA upstream 3528 9205345 ~ 9210930 (-) False LOC113534306
XM_034304957.1 mRNA upstream 3528 9205345 ~ 9210930 (-) True LOC113534306
XM_026927010.2 mRNA upstream 15427 9217244 ~ 9220204 (-) False LOC113534316
XM_026927009.2 mRNA upstream 15427 9217244 ~ 9220202 (-) True LOC113534316
TU114125 other downstream 715115 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 1579255 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 2035863 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 2328012 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 2999204 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 1066660 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 1066660 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 2386184 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 3110265 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 3195870 12397687 ~ 12405281 (-) False znf143b

Expression Profile