G127597


Basic Information

Item Value
gene id G127597
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 5448027 ~ 5472847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU150794
gtgtgtgtatatatatacgcTGAGTGCTACATTCACACTGATGCCCTGCTTTGCTGTCCATGGCTGCTCCGGTTGCATGAGGAATGCACGCTTTGCCTGGTGCAGAAAGCAGAAGTGAAAAACGCTCGTGCATGGATGCTTAAGCGGAGTGTGTGCGCGTGCCGTGGACAGGCTCTGGAGATTAAACGTGTTcaacagcagcagttctgctcTGTTCAGAACAAAGGAGGCGAGCAAATCAAATCAGGGTTGttgcatatacatatacacacatctatTTCTTTTTAAGCAGGCGATTCGCACATGCTCGAGGCTTGTACATGTCAGACCCAACCTGAGACAACGCGCTCGCGCtgcatggctgtttttttttcctgtttccaatccacacacattaatatttcattcGTGATTGCTTCATCACAGAGTCTCGCCTTTTCTAAAGCCTGAATCATGTCATGCACATTCCTGCTTGTTCAAACTTGAGCTTATTtacaaaaagcatttaaaaaaacacacattttgtgCGTTTCTCCTTAATTTAATTACATGCAGCATCTGAAGCGGTGACGCGCATATAACCAATTAACCACACTAAAGGCTGCCGTGCTGCGTTCACTGCTCCAGCCTGTTCCAGCGTTCCTCACTCTAACCTCACATCACATCTGTACGACCTCGTGTCACGTGACGAGATTGATTGCtgcttcttgttgttgttgtttttttgaggTAAACAATCCCAAGTATACACCATATTGTATCCCATGTTCTGCCTGGGGTATTCAATGTTTATGCATGGTCTCTaattttctgacactgggcTTGTTCTTTCAGtctataatgtatgtataaggAACACTCTTATCTGTGTAAATCtgacagatagataaatagaaacatgtttagtttattaaaagCTCGGCCGTTGCCTGTCCATCTCTCCATACGTTCTTCATATCGGGGTATTTCAGAATGGATCTCGATCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150794 True 989 lncRNA 0.43 2 5448027 5472847

Neighbor

gene id symbol gene type direction distance location
slc6a8 slc6a8,LOC107734513,LOC103036862,LOC108441094 coding downstream 238003 5165969 ~ 5210024 (-)
zgc:86609 LOC108265646,LOC103034245,LOC108441101,LOC107653429,LOC107743102 coding downstream 479270 4962114 ~ 4968757 (-)
tsr2 tsr2,LOC107743119 coding downstream 676507 4766795 ~ 4771520 (-)
LOC113535257 LOC108265307 coding downstream 709089 4737807 ~ 4738938 (-)
mecp2 mecp2,LOC107099240,LOC106936403,LOC106909763 coding downstream 1078402 4356141 ~ 4369625 (-)
si:dkey-8e10.3 LOC108264997 coding upstream 239330 5712177 ~ 5720828 (-)
nr1h5 LOC108265581,LOC108438559 coding upstream 647203 6120050 ~ 6131978 (-)
slc66a1 pqlc2 coding upstream 660351 6133198 ~ 6144873 (-)
trim33 trim33,LOC107725313,LOC107734526 coding upstream 673368 6146215 ~ 6172764 (-)
bcas2 bcas2,LOC107674303,LOC107734517,LOC107664982,LOC107725297 coding upstream 709696 6182543 ~ 6188864 (-)
G127595 NA non-coding downstream 21150 5412259 ~ 5426877 (-)
G127594 NA non-coding downstream 35862 5409371 ~ 5412165 (-)
G127592 NA non-coding downstream 92000 5352703 ~ 5356027 (-)
G127533 NA non-coding downstream 284901 5157144 ~ 5163126 (-)
G127481 si:ch211-180f4.1,LOC108265014,LOC108441099,LOC107584888,LOC107674375,LOC107734538,LOC107601766,LOC107743097 non-coding downstream 393266 5048102 ~ 5054761 (-)
LOC117597776 NA non-coding upstream 124978 5597825 ~ 5628613 (-)
G127705 NA non-coding upstream 238712 5711559 ~ 5711763 (-)
G127913 NA non-coding upstream 626788 6099635 ~ 6101470 (-)
G128372 NA non-coding upstream 1318682 6791529 ~ 6793100 (-)
G128373 NA non-coding upstream 1320613 6793460 ~ 6793866 (-)
abt1 abt1 other downstream 602247 4841421 ~ 4845780 (-)
cdk16 cdk16,LOC107674341,LOC107584883,LOC107601769,LOC107653433 other downstream 634350 4774550 ~ 4813677 (-)
zgc:113363 LOC108265528 other downstream 951132 4478075 ~ 4496895 (-)
gata1b LOC108266041 other downstream 1159288 4281917 ~ 4288739 (-)
rexo1 rexo1 other downstream 1354083 4076055 ~ 4093944 (-)
ntng2a ntng2,ntng2a,LOC107557204,LOC107757289,LOC107674329,LOC107725312,LOC108438355,LOC107664998,LOC106585788 other upstream 1449922 6922769 ~ 6989679 (-)
smim15 smim15 other upstream 2169368 7642215 ~ 7691454 (-)
G129009 LOC108265192 other upstream 2304669 7777516 ~ 7796821 (-)
LOC117597796 LOC108265274 other upstream 2355926 7828773 ~ 7842276 (-)
mad2l2 mad2l2 other upstream 2369680 7842527 ~ 7856477 (-)

Expression


Co-expression Network