hyal3 (LOC108265970)


Basic Information

Item Value
gene id hyal3
gene name LOC108265970
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7959279 ~ 7967936 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU152501
TGCACACACTTGCCGTGACTCTGCTGTCAGAAATCTGCCCAGAGAGACTGGAACAAATCGGCGTGATTTGTGTAATGTGATGAGTGATTAACCTCGAGCTGGGATCCTTTCTTCAGAAATGTGTGTCTGGCTCCAGATGTGTGACCACTGAGAGGAGAATACAAACTGAACATACTGATCTGGAGAACACACTTGGTGAGATTGCGTCTTTAGGTGCTGCAGGTGTGGTGTTGTGGGGTGAAATGTGGTTTGCCAAGTCCAAGCACCAGTGTATTCTTCTCCGGAACTACATACGCACGGTCTTGGGTGTGTACGTGAACATTCTGCGTCTGGGTGTGGCACATTGCAGCAAGAGCGTGTGCCGTGCTAATGGTCGCTGCGTGAGACGCAACCCTCATTCGGGTCACATGATTGCCCAGTTCAACACTAGGAGTGAACATGACCATGACCTGAGGTCAAAATTCAAATGTGTGTGCTATGAAGGATGGAGTGGAGAGCAGTGTGAGGAGAACATCATGGATGTGAAGTGAAGCTAGTGCTAACACCTCTTTCATATCCTGttttaaattttgaattttaaatcaaattctgAAAAGTGTACTAGTTTTTACCCCTAATAAATCAGTTCCAGCA
>XM_026920072.2
AGCAATGTTTGACCTAAAGCTGCCACAGTTATTATGGAAAGTAGGATAAAGTCAGCTAGAAATATGTGAAATAGTAGTATGAGGAATTTCCTATGCTGTTTAAACTTCCTACATATAGTGTGTTTTGATGCTGTTGAACTGGAATTTGTTGTAGTACTAGAACAAATGGCACTGGTACTGATAATAAATTTTCACATCATGTTAAAGGGCATACACTCATGATATcctttcttaataataataataataataaggagtGATCACAACTTTGTACCACATGGAAACTGGATCCTAATGCGTGGCCGTGACTGCCCCTGTGTTCATACTTGCAAGCAATAAAGCAGCAGACGTGCATTCGTTTTCTGCACGTGTGCGCAACATGGAGTCATGATTTAAGAATtgagacaaatccaaacaattggCTCCAATGGCTATATGGTTGCTTGTGGGTATATAGTGGCTTTCCAGTGGtgacttagtggttagcatgtttgcctcacacctccggggttggtggtttgattctcacctgtgtgtgtgtggagtttgtatgTTGTTCCTGTGTTTTAGGGGTTTCTGTGCGATAGTGCCGTGCGACGGGTTGGCAccccccgtccagggtgtcccccacttTGTGCCCTGGGATAGTCTCTCTTATCCCTGTGTAGgatacagaagatggatggatggtctCTTGACATGGTCTGACATTTCTTCACTTCACCACACACAACTTtagttagttcccatttactgtttgatgcgCAAAATTGGAAGAAAAACGTATAACCGTGGTTCTTATTCATATCCAacctcattaaatgtgtatagagatattacgaataaaaaataaatcttggaagGAAGTGTCAGAGAAGtattggtgcctctggtgagtgtaagTAGGTAGTAAAGtaagcttgctttgctaatctgtcGACCGAGAAAGAATGAAGCTAGCACGTAACATGGAAATTTAACTTAActgtattttaaacaaaaatgatgtGTATAAATTGTATAGTGGGCTGTAGGTCATGGATTATGCCAATTCTACTGCTGCTTCTCattgtacaaaaaaacaaaaaaaaaaaacagtgggtAGTACTCACCCACAAGAGTCAAACTCCAAACAACTTGTTGCTTGCTAGTATAAACATAAGATGACAGAGCTTGTTCCCATGCATTACGAATTCGTAcatatgcattattttattaagaaGAAATGTCATCATCAGAGCTCTGTATAAACTATTCTTTTATCACTGTCTCTAAAActgttacattatatttttataaatatggcTAAGCTAGCCTGTCTTTATTCTATAAGTAAGAGCTGATATTTGTGGCATTAGTAATAGGTATACATTGAACAACATTGTCTATCATGCAACCATGATATTAGCACATGCCTTGCAGATGGATacactttgtgcttttttgcaGGTTGGTTCCActtcattttaaagtgttttcttttttctaacaCATTTGACTTCAATTACAAGCCTTTCTGAAGTTAAAACTCTCATTGGGACCAGGCCTGAGAAACACTGCTCCTATATATCTGACCTGAACTCTTTAACATgttctcatttttaaacatcCATATGCATGTCAGCTTGTCTGAGTGGTATCTTGTCACAATGTGCCTGACTAGAGTTTTCTCTcaaccctcttttttttttctcaccacttGTCCACACTTCTGTTAACCacttaacttttttaaaatgaaaatagctTCAGTTGAACTGATCTCAAATCAGCAAACAGAGATGCTAAACACTGTCATGTACCTAAAGGCAGTCTATTTCCTGATTCTGACGCCTTCTTCttggtgtgaaagagtgtgtgtggttcagtTTAGTCTTGctgtttttatacacacatcACTGTAGGAGGAGCCATCATGTTTTGCGGGTCCTCTCTGCTGCTTTCCCTCCTCCTGCCCCTGACCTTCACCGTGTTTCCAGGTGACACTGTTTCAGACAGTGACTCTGTCATCAGGAAACATGGTTTCTCTGTGGTATGGAACATGCCCACTTCAAAATGCGAGCGTGTGTTCGGGGTTTCACTGCCCCTGCAGGAGTATGGCATCATACACAATGCAGAACAGAGATTCAGAGGTGAGAACATAAGTCTGTTTTACGAACGCCGACTTGGTTTGTATCCCTACATCAATCGCGAGGGCTTGAGTGTGAATGGCGGGGTTCCTCAGAACGGCAATCTTGACAGTCACCTTGCACTGTCAGAGGGACAGATACTTGCACTTATGCGGCGGAGTTTCAGCGGGTTGGCTGTGGTGGACTGGGAGAAGTGGCAACCTCTGTGGGTCCGCAACTACGGAACCCGACAGGCCTACAATGATCTGTCTAAGCAACTGGTAAGAGAGAAACATCCAGACATGTCTGAGGAGGAAGTAACATCACTGGCAACGGCTGAGTTTGAGAAAGCAGCGAAATCGTTTATGGAAGAAACTCTGCGACTTGGAGTCAAGGCTCGTCCCAAGGGATTGTGGGGGTTTTATGGATACCCTGGCTGCTATAATGACCGCGGGGCAAAAGAAAGTGGGTACACCGGGCAGTGCAAACCTGGAACAGAGGCACTAAATGACAAACTGGCATTTTTATGGCGGCAGTCCACTGCACTCTACCCAAGTGTATATGTGCACCATGAGCTAGCAGGACACCCAAACACACGGCTTATGGTAAGACACCGTGTACTCGAGGCATTCCGAGTGGCATCGCAGCATGGACGTGACGCTCCTCGACTTCCCATTCTACCTTATGCAAGAGTGGCCTTTACAAAAACTCTGCACTTTTTAAACCAGACTGATCTGGAGAACACACTTGGTGAGATTGCGTCTTTAGGTGCTGCAGGTGTGGTGTTGTGGGGTGAAATGTGGTTTGCCAAGTCCAAGCACCAGTGTATTCTTCTCCGGAACTACATACGCACGGTCTTGGGTGTGTACGTGAACATTCTGCGTCTGGGTGTGGCACATTGCAGCAAGAGCGTGTGCCGTGCTAATGGTCGCTGCGTGAGACGCAACCCTCATTCGGGTCACATGATTGCCCAGTTCAACACTAGGAGTGAACATGACCATGACCTGAGGTCAAAATTCAAATGTGTGTGCTATGAAGGATGGAGTGGAGAGCAGTGTGAGGAGAACATCATGGATGTGAAGTGAAGCTAGTGCTAACACCTCTTTCATATCCTGttttaaattttgaattttaaatcaaattctgAAAAGTGTACTAGTTTTTACCCCTAATAAATCAGTTCCAGCACAAAGCa
>XM_026920073.2
GGGCGCTGTGGTGCAGTCTCCGCCTCAGAGCGCAGCTCTTCTGCACACACTTGCCGTGACTCTGCTGTCAGAAATCTGCCCAGAGAGACTGGAACAAATCGGCGTGATTTGTGTAATGTGATGAGTGATTAACCTCGAGCTGGGATCCTTTCTTCAGAAATGTGTGTCTGGCTCCAGATGTGTGACCACTGAGAGGAGAATACAAACTGAACATGAGGAGCCATCATGTTTTGCGGGTCCTCTCTGCTGCTTTCCCTCCTCCTGCCCCTGACCTTCACCGTGTTTCCAGGTGACACTGTTTCAGACAGTGACTCTGTCATCAGGAAACATGGTTTCTCTGTGGTATGGAACATGCCCACTTCAAAATGCGAGCGTGTGTTCGGGGTTTCACTGCCCCTGCAGGAGTATGGCATCATACACAATGCAGAACAGAGATTCAGAGGTGAGAACATAAGTCTGTTTTACGAACGCCGACTTGGTTTGTATCCCTACATCAATCGCGAGGGCTTGAGTGTGAATGGCGGGGTTCCTCAGAACGGCAATCTTGACAGTCACCTTGCACTGTCAGAGGGACAGATACTTGCACTTATGCGGCGGAGTTTCAGCGGGTTGGCTGTGGTGGACTGGGAGAAGTGGCAACCTCTGTGGGTCCGCAACTACGGAACCCGACAGGCCTACAATGATCTGTCTAAGCAACTGGTAAGAGAGAAACATCCAGACATGTCTGAGGAGGAAGTAACATCACTGGCAACGGCTGAGTTTGAGAAAGCAGCGAAATCGTTTATGGAAGAAACTCTGCGACTTGGAGTCAAGGCTCGTCCCAAGGGATTGTGGGGGTTTTATGGATACCCTGGCTGCTATAATGACCGCGGGGCAAAAGAAAGTGGGTACACCGGGCAGTGCAAACCTGGAACAGAGGCACTAAATGACAAACTGGCATTTTTATGGCGGCAGTCCACTGCACTCTACCCAAGTGTATATGTGCACCATGAGCTAGCAGGACACCCAAACACACGGCTTATGGTAAGACACCGTGTACTCGAGGCATTCCGAGTGGCATCGCAGCATGGACGTGACGCTCCTCGACTTCCCATTCTACCTTATGCAAGAGTGGCCTTTACAAAAACTCTGCACTTTTTAAACCAGACTGATCTGGAGAACACACTTGGTGAGATTGCGTCTTTAGGTGCTGCAGGTGTGGTGTTGTGGGGTGAAATGTGGTTTGCCAAGTCCAAGCACCAGTGTATTCTTCTCCGGAACTACATACGCACGGTCTTGGGTGTGTACGTGAACATTCTGCGTCTGGGTGTGGCACATTGCAGCAAGAGCGTGTGCCGTGCTAATGGTCGCTGCGTGAGACGCAACCCTCATTCGGGTCACATGATTGCCCAGTTCAACACTAGGAGTGAACATGACCATGACCTGAGGTCAAAATTCAAATGTGTGTGCTATGAAGGATGGAGTGGAGAGCAGTGTGAGGAGAACATCATGGATGTGAAGTGAAGCTAGTGCTAACACCTCTTTCATATCCTGttttaaattttgaattttaaatcaaattctgAAAAGTGTACTAGTTTTTACCCCTAATAAATCAGTTCCAGCACAAAGCa

Function

NR:

description
hyaluronidase-3-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
TU152501 False 633 TUCP 0.46 3 7959286 7967895
XM_026920072.2 True 3303 mRNA 0.43 4 7959279 7967218
XM_026920073.2 False 1613 mRNA 0.50 4 7959279 7967936

Neighbor

gene id symbol gene type direction distance location
amt amt,LOC107717525,LOC107679535,LOC107711956,LOC106566775 coding downstream 6141 7945386 ~ 7953138 (-)
ifrd2 ifrd2,LOC108265266,LOC107711954,LOC107556493,LOC107679490,LOC107717527,LOC107669668 coding downstream 16973 7929588 ~ 7942306 (-)
dffb dffb coding downstream 32390 7922655 ~ 7926889 (-)
b3gnt7l LOC108265270 coding downstream 45076 7908654 ~ 7914203 (-)
lrrc47 lrrc47 coding downstream 86079 7865475 ~ 7873200 (-)
prkar2aa prkar2aa,LOC107669629,LOC107556498,LOC107679546,LOC107717523,LOC107711958,LOC107591783 coding upstream 3163 7971099 ~ 7998854 (-)
mgll mgll coding upstream 36701 8004637 ~ 8034119 (-)
LOC113538912 NA coding upstream 69322 8037258 ~ 8053508 (-)
LOC113535810 NA coding upstream 90377 8058313 ~ 8081191 (-)
LOC113531413 slc26a6 coding upstream 118381 8086317 ~ 8098727 (-)
G129061 NA non-coding downstream 15497 7943155 ~ 7943782 (-)
G129023 NA non-coding downstream 142132 7816467 ~ 7817147 (-)
G129022 NA non-coding downstream 143534 7815509 ~ 7815745 (-)
LOC117597801 NA non-coding downstream 166193 7791805 ~ 7793086 (-)
G129019 NA non-coding downstream 176515 7780854 ~ 7782764 (-)
LOC113533906 NA non-coding upstream 246251 8214187 ~ 8215716 (-)
G129282 NA non-coding upstream 353171 8321107 ~ 8322278 (-)
G129348 NA non-coding upstream 515148 8483084 ~ 8484020 (-)
G129553 NA non-coding upstream 756205 8724141 ~ 8725267 (-)
G129555 NA non-coding upstream 763317 8731253 ~ 8731461 (-)
mad2l2 mad2l2 other downstream 102802 7842527 ~ 7856477 (-)
LOC117597796 LOC108265274 other downstream 117003 7828773 ~ 7842276 (-)
G129009 LOC108265192 other downstream 162458 7777516 ~ 7796821 (-)
smim15 smim15 other downstream 267825 7642215 ~ 7691454 (-)
ntng2a ntng2,ntng2a,LOC107557204,LOC107757289,LOC107674329,LOC107725312,LOC108438355,LOC107664998,LOC106585788 other downstream 969600 6922769 ~ 6989679 (-)
arih2 arih2 other upstream 268000 8235936 ~ 8253436 (-)
LOC113539947 LOC108265860 other upstream 1345948 9313884 ~ 9320756 (-)
G129890 NA other upstream 1356183 9324119 ~ 9326687 (-)
srxn1 srxn1 other upstream 1378959 9346895 ~ 9364467 (-)
G129954 LOC107711852,LOC107594520,LOC108265838,LOC107679810,LOC108425079,LOC107088737 other upstream 1570926 9538862 ~ 9541278 (-)

Expression


Co-expression Network