lrrc47 (lrrc47)


Basic Information

Item Value
gene id lrrc47
gene name lrrc47
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7865475 ~ 7873200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928497.2
AGTTTCTTACTCTTTCCGGTGTTGCGTTTGTTTGGCAGTATGGCGGCAGAGAACTTGGCTGTTTGGCCCGAAATTGAAAAggtagaaaaagaaaacagaagagagTTGGTTCTTCAAGGTGGAGCAGTCGATGAGAAGATAAAGAAAAGCGGCGGGATTCATCAGAGACTTTATTCACTAAACCTCCTCAATTACCTGGAAATCAGTCAGTGTCCGAGTCTGCATGAGCTccatgaaaacattaaaaacctgTCTCACCTGCAGAGCCTCGTCCTCTGCAGGAACAAGATCTCCTCAGTGCCCAGGAGCATCGGAGAGCTGAAATGGCTGAAAGTCTTGGACTTGTCAGTGAACGAGCTGCAGGCTTTACCGGAGGAGATCTGTTGTCTCAGCGAGCTCACCACGCTGAATGTGAGCTGTAACAGCATCGCGGCTCTTCCGGACGGGTTAAGCCGATGCACCAAGCTGTGCAGCATCAACGTGGGGAAGAACGCGCTGGTGTGTCTTCCTGAAGACCTGTTCTCCCCCAAACTGGAGCTGCTTAACACTGTCATAGCGTCAGAAAACATCATCGAGCAATTAAGCAGTGACATCCACAACCTGCCGGCGCTGAAGGTGTTGGACCTTTCCAGCAACAAGCTCAGTGAGATCCCATTCGAGCTGGCTGACTGCCCCAAGCTGAAGGACATCAACTTCAAAGGAAACAAGCTGAAGGACAAGCGGCTGGAGAAGATGGTGAACGGCTGCCAGACTAAGTCGGTGTTGGACTACCTGAGAGTAGGGGGCCGAGGGAAAGGAAAGGGCAAGCAGCTGGACACAGATGGTGCTGAGCAGAGTGACAGGAATCGGAATGTCTCCAAAAGAAGAATGCTGAAACAGAGGGATAAAAAGGAGGAAGATGCAGTGGATGAGTTGCAGAAAATGGTTGTTAAAATCCTTCATGTATCTGATTCCCCCTCTGCCATAACGGTGAAAGTCTCTCCTCAGGTGAAAGACGTGAGGCCGTATATAGTATGCTGCATCGTTAAAGGGATGAACCTGAAACCAGGGAATGCCCTCAAGAGGTTCTTAGCAGCTCAGACCAAACTTCATGATGACATTTGTGCCAAACGGACAACAGCTACTATTGCAACTCATGACCTGAGCTCACTGAAAGCCCCTCTACAGTATGATGCCAGACCTCCTGAGGATCTGAAGATAGTTCCTCTGGGTCGTAAAGAGATGAAGGCCGGTAACCTCCTAAGGATGCTCCAGCAAGAGGCAGATGAGCagaggaaacagaaaaaacGGCAGAATGTGTCAGGCCTTCACAAGTACCTTCAGCTGTTGGATGGGAAAGATCATTACCCTTGCCTGGTTGATGCTGATGGTCATGTGATCTCATTCCCTCCAATCACAAACAGTGAGAGGACAAAGATAAAAAAGACTACAAGTGAGCTTCTCCTAGAGGTCACAAGCGCTACGAGTTTACAAACTTGTAAGGACGTCATGGACGTGCTCATTATAAAAATGGCGGAGCTGAATAAGTTTACCTTTGACAACAGAGAGGAGACCTGTTCAGATGACGAGACAGTCTCAGACTCTAACCCAGCGACAGACAGCTTAGCTTCACCTGAGTTGATCGTGGTGCAGGTGAAGGTGGTGGACATGGAGGGCAATCTGAAGGTCTTGTACCCGTCTAAAACTGACCTGAATTCTGATGTCAGCCATCTGAACATCATCCGGTAACCAGCTTCAACAGACAAGCCGTGAATACTGTGTGAAACTAGTAGCTGTATAAATAAGACCAGTatcactatgtgtgtgtgtgtatatatgtgtgtgcatatatgtatatatgtgtgtgcatatatatatatata

Function

symbol description
lrrc47 Predicted to enable RNA binding activity and phenylalanine-tRNA ligase activity. Orthologous to human LRRC47 (leucine rich repeat containing 47).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 47

GO:

id name namespace
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928497.2 True 1862 mRNA 0.48 8 7865475 7873200

Neighbor

gene id symbol gene type direction distance location
LOC113528003 NA coding downstream 41086 7800047 ~ 7824389 (-)
LOC113525829 LOC108265192 coding downstream 68629 7793204 ~ 7796846 (-)
LOC113535262 LOC108265277 coding downstream 75408 7763398 ~ 7790067 (-)
LOC117597799 NA coding downstream 79000 7778498 ~ 7786475 (-)
LOC117597800 LOC108265277 coding downstream 105658 7750333 ~ 7759817 (-)
b3gnt7l LOC108265270 coding upstream 35454 7908654 ~ 7914203 (-)
dffb dffb coding upstream 49455 7922655 ~ 7926889 (-)
ifrd2 ifrd2,LOC108265266,LOC107711954,LOC107556493,LOC107679490,LOC107717527,LOC107669668 coding upstream 56388 7929588 ~ 7942306 (-)
amt amt,LOC107717525,LOC107679535,LOC107711956,LOC106566775 coding upstream 72186 7945386 ~ 7953138 (-)
prkar2aa prkar2aa,LOC107669629,LOC107556498,LOC107679546,LOC107717523,LOC107711958,LOC107591783 coding upstream 97899 7971099 ~ 7998854 (-)
G129023 NA non-coding downstream 48328 7816467 ~ 7817147 (-)
G129022 NA non-coding downstream 49730 7815509 ~ 7815745 (-)
LOC117597801 NA non-coding downstream 72389 7791805 ~ 7793086 (-)
G129019 NA non-coding downstream 82711 7780854 ~ 7782764 (-)
G128939 NA non-coding downstream 327621 7537645 ~ 7537854 (-)
G129061 NA non-coding upstream 69955 7943155 ~ 7943782 (-)
LOC113533906 NA non-coding upstream 340987 8214187 ~ 8215716 (-)
G129282 NA non-coding upstream 447907 8321107 ~ 8322278 (-)
G129348 NA non-coding upstream 609884 8483084 ~ 8484020 (-)
G129553 NA non-coding upstream 850941 8724141 ~ 8725267 (-)
mad2l2 mad2l2 other downstream 8998 7842527 ~ 7856477 (-)
LOC117597796 LOC108265274 other downstream 23199 7828773 ~ 7842276 (-)
G129009 LOC108265192 other downstream 68654 7777516 ~ 7796821 (-)
smim15 smim15 other downstream 174021 7642215 ~ 7691454 (-)
ntng2a ntng2,ntng2a,LOC107557204,LOC107757289,LOC107674329,LOC107725312,LOC108438355,LOC107664998,LOC106585788 other downstream 875796 6922769 ~ 6989679 (-)
hyal3 LOC108265970 other upstream 86079 7959279 ~ 7967936 (-)
arih2 arih2 other upstream 362736 8235936 ~ 8253436 (-)
LOC113539947 LOC108265860 other upstream 1440684 9313884 ~ 9320756 (-)
G129890 NA other upstream 1450919 9324119 ~ 9326687 (-)
srxn1 srxn1 other upstream 1473695 9346895 ~ 9364467 (-)

Expression


Co-expression Network