uck2a (uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269)


Basic Information

Item Value
gene id uck2a
gene name uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11677511 ~ 11696791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU154744
GGATAttacttagctaacattacagcAAATCTGTCGTCCGTGTGTGGCAAGATTATGGAGCTTCTTGGCCAGAATAAAATTGACCATCACCAAAGGCAGGTTGCCATCCTGAGTCAGGACAGTTTCTACAGGGTGCTTACCCCAGAACAGAAAACCAAGGCTCTTAAAGGACAATTCAACTTTGATCACCCAGGAAGAAGGAAACAGTGACAGTGTACCCGGCTGACGTGGTGCTGTTCGAAGGCATTCTCATGTTCTACTCACAGGAAATCCGGGATCTCTTTCAGATGAAGCTGTTTGTGGACACAGATGCTGATACACGACTCTCACGCAGAGtCTTGCGAGACATCAGTGAGCGAGGACGGGACCTGGAGCAGGTCTTAAGTCAATATATCACATTTGTGAAGCCTGCTTTTGAAGAGTTCTGCCTGCCAGTAAGCGCTCAAGTATTTATCACATTATTTCTATGTACAGAACCTCCCATTAGTCAGTCACCTTTCTATGGAGCAAAACTGCAAAAGTGAggacctgattttttttaattgtaactTTTTAGAAGTcattgtttgcatgtgtgtgtgtgtgtatatatatattCAAGTCTCTACCTATGAAACAAGGTTTTGTAGTTGTAAAGTACTGTtagtactgttttatttaaatatctaaaCCAC
>XM_026926870.2
acacacacacacaaagggaagAGGAAGGAGGCGGAGCAGTGCTGGTGTTGCTTTGCTCGGAGCAGCGCTGATCGTGTTCACACTGACCGGCAGCATGGCAGGAGAAAGCGAGGCCGATCTGGAGCACCGTGAAcccgagcacacacacaccatccgaCAGCCTTTCCTCATCGGGGTGGCGGGGGGCACTGCCAGCGGAAAGTCGTCCGTGTGTGGCAAGATTATGGAGCTTCTTGGCCAGAATAAAATTGACCATCACCAAAGGCAGGTTGCCATCCTGAGTCAGGACAGTTTCTACAGGGTGCTTACCCCAGAACAGAAAACCAAGGCTCTTAAAGGACAATTCAACTTTGATCACCCAGATGCATTTGATAATGAGTTAATAGTTAAGACTCTGTGGGACATCATGGAGGGAAGAACAGTTCAGATCCCAGTCTATGACTTTGTAACCCATTCCAGGAAGAAGGAAACAGTGACAGTGTACCCGGCTGACGTGGTGCTGTTCGAAGGCATTCTCATGTTCTACTCACAGGAAATCCGGGATCTCTTTCAGATGAAGCTGTTTGTGGACACAGATGCTGATACACGACTCTCACGCAGAGtCTTGCGAGACATCAGTGAGCGAGGACGGGACCTGGAGCAGGTCTTAAGTCAATATATCACATTTGTGAAGCCTGCTTTTGAAGAGTTCTGCCTGCCAACAAAAAAGTATGCTGATGTGATCATCCCAAGGGGAGCTGATAATCTAGtTGCCATTAATCTGATAGTGCAGCACATCCAGGACATTCTGAACGGTGGCTTGACCAAACGACTGAACGGCTGTCTTAATGGCCACACTACTCCTCGCAAGCGGCAGCCATCAGAGTCAAGCAGCAGGCCACACTGATATGATATGCCCTACAAGGGAACCAGAGAAGAGGGACAATGGACATGGGACTTGAAGGAgagttgtgtgtatatactgacAATTTGCaaactgtatttaaaacaaaaaaaaaatcaagaaatgcCTTCTTTGACTTGCAAGTGttattgttttgtcttttgttttttgaatgACTGCTGCACTTATTTGTGAGAGGAAAATGTTCCTTGCTGAAAACTATTGGTCAAAGCTATTTTTCTTGTCCTATTAATTTGTGCATATTTTATTCATCTGGCCCCAGATTATGAgtgtttctaaaaataatcagataGTACGGGTCACTTCAGAATTTGCCAAAGGGACATAGCTGGTAAAGACCTGCACTGAGTTTTATGACTTGAatagaacaacaaaaaaaatcaacatattTTCAAGGTTCAAGTACAACTTCTGCCTCTTTGTAGTAATATTATTGCCTCCAAAGCTTTTTCAGCCCCTTTCGCTGTATGTTAGTGTTTATTCCAAGAGCAACGTGACTTTATTCTAAAGGAGGGATGACTTTTCTTTAATCCTTCATTTTTGCTAACATCCATCTTCATTATAAGTAGGTCAGGGCTTGTATTGTATATtgcactgtaaaataaagctCAGTGGCATGTTATGAACAGTATGTTAACATGATGGAGATGCTTGCGTACAGACAAAGAAAAGTTTGGATGTTCTCCAGGTCCTATGCAGCATGTCGAAAGACAGATTCTCTTAACACAGCTTAAAGTATATGCAGATTAAGTAAAGAAACCAAGAACTCGTATGACTGTCTGTGCTCTACTGCATTCAATGTAGTGTTGTCACACCTTTCAAACAACGCTCAGAGGCAGATGATAAATTGCAAaaatactgattttatttaacagaattTATTTCTTTCAGATAATTATTGAGTTCTTTTTACCATCAGCTGCAAACATAAAGCAAACATTATGATGGCACTCCACtcagtatgtattttttttaacccaacaAATTTTGCCACAGAAtctattttgtcattttgcagaATGAAATAGCAGCTTCAGTTTTCTCTCTAACTCAGGATCCCATGTTTATGCACGGGATTTATGCAGGGACTTATGCATTGGACCATTGACTTTCCTTCTTCATTTCCTTTTATAAGGGCTCATCGATTTTGAACCTCTTCTGAGAGTATAATCCTGTCCTGACTATAACAGATTTTGTATCTCtagtatttgtttaatatttattatttttcaaaatcgCATTACTCTCAgaaatgaatcaataatgtagatgTTCTTGCATTGTCCTTTCTGTCCTGGCATACActtcttccacttttttcctgcTACACCTCTACACCTACACTGCTGCTACTGATGCTAGGTAATTACTAAATTGGCTGAACAGTGTAATGCAAGTGTATTACCAAATTGAAGTGGTTGTGTAAGCCagtgaatttatatttaattgttattttaggAGGCTGCAGTTCAATAAAAAACCGTGCCCTGCTCTCAGGGCCAAACAGAGAATCATTACTTTGTGGTGTTAAGGACTGTTTGGTCTGTCCCTATTAAATACAAGTTGTGTAAATAACTCTGTTTTTCTGACACTGTTTATGTTTCATGTATAAACTTTAATGTTATTACACAAATCAGTATGTTCTGATATTAATCATGAATTACCAACTGCCTCCTGGTGGATTGTGCTGCTTTTACTCACAAATACTAATGCAAAAAACACATACCTTAATAATATATACCTGTGGTTGAGTCGGTGAAGTCTCTCAGACACCAGCTGTAGTAAATTGCAATATGCCTTATAACAGTTGCATTTTCAATTTCACCAATTtgcgtttttattttaaattatgcaGACCAgagaataattttatttcagtttcactATGGGGGTGATCAGTTTCTGTTGTATAATGTAActctttatttgttgtttttggtcAATGcattcaatgatttttttttttttttttttttttcagaatatgtTAAATAGTGTATGTATACGTGTTGATATCATCAAACTGGAGATGTAATGATTCAGAAAGTTAAGAAGCAGTGCAGGTTAAGAGTTAAGAGACAGTGTTTTGGGGAGGGATTGTGAATATGTGGTCCTGCAGTAAGTAAATGAGAATGACTGATATTGATAGATAAATGAACactattatattaataatgagAGACAGGATGGGTCATGTCTTTGCATTTCTTTGTAATCGTCTCAGTGTTTCACAATGCATTGTAgtttaaagaaatgaataaacaggTAAAATGGAcgattaaataaaattttgtatCATA
>XM_034306529.1
GTAGATGAAGCTCATGACCGCGTGGTTCAGACCATAAACGTGTCCTTTAACGTCTGTTCCGTTTTTCCTGCATCACGCTCAGTTTCCTGTCGGATAttacttagctaacattacagcAAATCTGTCGTCCGTGTGTGGCAAGATTATGGAGCTTCTTGGCCAGAATAAAATTGACCATCACCAAAGGCAGGTTGCCATCCTGAGTCAGGACAGTTTCTACAGGGTGCTTACCCCAGAACAGAAAACCAAGGCTCTTAAAGGACAATTCAACTTTGATCACCCAGATGCATTTGATAATGAGTTAATAGTTAAGACTCTGTGGGACATCATGGAGGGAAGAACAGTTCAGATCCCAGTCTATGACTTTGTAACCCATTCCAGGAAGAAGGAAACAGTGACAGTGTACCCGGCTGACGTGGTGCTGTTCGAAGGCATTCTCATGTTCTACTCACAGGAAATCCGGGATCTCTTTCAGATGAAGCTGTTTGTGGACACAGATGCTGATACACGACTCTCACGCAGAGtCTTGCGAGACATCAGTGAGCGAGGACGGGACCTGGAGCAGGTCTTAAGTCAATATATCACATTTGTGAAGCCTGCTTTTGAAGAGTTCTGCCTGCCAACAAAAAAGTATGCTGATGTGATCATCCCAAGGGGAGCTGATAATCTAGtTGCCATTAATCTGATAGTGCAGCACATCCAGGACATTCTGAACGGTGGCTTGACCAAACGACTGAACGGCTGTCTTAATGGCCACACTACTCCTCGCAAGCGGCAGCCATCAGAGTCAAGCAGCAGGCCACACTGATATGATATGCCCTACAAGGGAACCAGAGAAGAGGGACAATGGACATGGGACTTGAAGGAgagttgtgtgtatatactgacAATTTGCaaactgtatttaaaacaaaaaaaaaatcaagaaatgcCTTCTTTGACTTGCAAGTGttattgttttgtcttttgttttttgaatgACTGCTGCACTTATTTGTGAGAGGAAAATGTTCCTTGCTGAAAACTATTGGTCAAAGCTATTTTTCTTGTCCTATTAATTTGTGCATATTTTATTCATCTGGCCCCAGATTATGAgtgtttctaaaaataatcagataGTACGGGTCACTTCAGAATTTGCCAAAGGGACATAGCTGGTAAAGACCTGCACTGAGTTTTATGACTTGAatagaacaacaaaaaaaatcaacatattTTCAAGGTTCAAGTACAACTTCTGCCTCTTTGTAGTAATATTATTGCCTCCAAAGCTTTTTCAGCCCCTTTCGCTGTATGTTAGTGTTTATTCCAAGAGCAACGTGACTTTATTCTAAAGGAGGGATGACTTTTCTTTAATCCTTCATTTTTGCTAACATCCATCTTCATTATAAGTAGGTCAGGGCTTGTATTGTATATtgcactgtaaaataaagctCAGTGGCATGTTATGAACAGTATGTTAACATGATGGAGATGCTTGCGTACAGACAAAGAAAAGTTTGGATGTTCTCCAGGTCCTATGCAGCATGTCGAAAGACAGATTCTCTTAACACAGCTTAAAGTATATGCAGATTAAGTAAAGAAACCAAGAACTCGTATGACTGTCTGTGCTCTACTGCATTCAATGTAGTGTTGTCACACCTTTCAAACAACGCTCAGAGGCAGATGATAAATTGCAAaaatactgattttatttaacagaattTATTTCTTTCAGATAATTATTGAGTTCTTTTTACCATCAGCTGCAAACATAAAGCAAACATTATGATGGCACTCCACtcagtatgtattttttttaacccaacaAATTTTGCCACAGAAtctattttgtcattttgcagaATGAAATAGCAGCTTCAGTTTTCTCTCTAACTCAGGATCCCATGTTTATGCACGGGATTTATGCAGGGACTTATGCATTGGACCATTGACTTTCCTTCTTCATTTCCTTTTATAAGGGCTCATCGATTTTGAACCTCTTCTGAGAGTATAATCCTGTCCTGACTATAACAGATTTTGTATCTCtagtatttgtttaatatttattatttttcaaaatcgCATTACTCTCAgaaatgaatcaataatgtagatgTTCTTGCATTGTCCTTTCTGTCCTGGCATACActtcttccacttttttcctgcTACACCTCTACACCTACACTGCTGCTACTGATGCTAGGTAATTACTAAATTGGCTGAACAGTGTAATGCAAGTGTATTACCAAATTGAAGTGGTTGTGTAAGCCagtgaatttatatttaattgttattttaggAGGCTGCAGTTCAATAAAAAACCGTGCCCTGCTCTCAGGGCCAAACAGAGAATCATTACTTTGTGGTGTTAAGGACTGTTTGGTCTGTCCCTATTAAATACAAGTTGTGTAAATAACTCTGTTTTTCTGACACTGTTTATGTTTCATGTATAAACTTTAATGTTATTACACAAATCAGTATGTTCTGATATTAATCATGAATTACCAACTGCCTCCTGGTGGATTGTGCTGCTTTTACTCACAAATACTAATGCAAAAAACACATACCTTAATAATATATACCTGTGGTTGAGTCGGTGAAGTCTCTCAGACACCAGCTGTAGTAAATTGCAATATGCCTTATAACAGTTGCATTTTCAATTTCACCAATTtgcgtttttattttaaattatgcaGACCAgagaataattttatttcagtttcactATGGGGGTGATCAGTTTCTGTTGTATAATGTAActctttatttgttgtttttggtcAATGcattcaatgatttttttttttttttttttttttcagaatatgtTAAATAGTGTATGTATACGTGTTGATATCATCAAACTGGAGATGTAATGATTCAGAAAGTTAAGAAGCAGTGCAGGTTAAGAGTTAAGAGACAGTGTTTTGGGGAGGGATTGTGAATATGTGGTCCTGCAGTAAGTAAATGAGAATGACTGATATTGATAGATAAATGAACactattatattaataatgagAGACAGGATGGGTCATGTCTTTGCATTTCTTTGTAATCGTCTCAGTGTTTCACAATGCATTGTAgtttaaagaaatgaataaacaggTAAAATGGAcgattaaataaaattttgtatCATA

Function

symbol description
uck2a Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK2 (uridine-cytidine kinase 2).
uck2 Enables identical protein binding activity. Predicted to be involved in CTP salvage; UMP salvage; and phosphorylation. Predicted to be active in cytosol. Biomarker of pancreatic cancer.

NR:

description
PREDICTED: uridine-cytidine kinase 2-A isoform X1

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
TU154744 False 674 lncRNA 0.42 5 11677903 11689674
XM_026926870.2 True 3204 mRNA 0.39 7 11677511 11696791
XM_034306529.1 False 3126 mRNA 0.37 7 11677812 11696791

Neighbor

gene id symbol gene type direction distance location
LOC113538016 NA coding upstream 68954 11597781 ~ 11608557 (+)
si:ch211-198n5.11 LOC108265604 coding upstream 80898 11588824 ~ 11596613 (+)
cdkn2c cdkn2c coding upstream 229627 11436385 ~ 11447884 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding upstream 388593 11219551 ~ 11288918 (+)
dnttip2 LOC102796155 coding upstream 775435 10895439 ~ 10902076 (+)
magoh mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding downstream 92 11696883 ~ 11699368 (+)
spryd4 spryd4 coding downstream 18152 11714943 ~ 11716674 (+)
col2a1a col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244 coding downstream 41548 11738339 ~ 11763591 (+)
cry3a cry1ba,LOC108265656,LOC108441644,LOC107668038 coding downstream 69249 11766040 ~ 11791173 (+)
itpr3 itpr3,LOC108441646,LOC106572092,LOC107731245 coding downstream 106257 11803048 ~ 11839884 (+)
G130960 NA non-coding upstream 125480 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 318131 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 729165 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 760886 10916337 ~ 10916625 (+)
G130611 NA non-coding upstream 766136 10911164 ~ 10911375 (+)
G131061 NA non-coding downstream 20041 11716832 ~ 11717885 (+)
G131279 NA non-coding downstream 520213 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 529361 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 823103 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 993376 12690167 ~ 12712485 (+)
LOC113530800 LOC108266038 other upstream 43667 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 803385 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 936086 10706719 ~ 10741425 (+)
tmem51a tmem51 other upstream 980680 10683078 ~ 10696831 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other upstream 1113950 10543919 ~ 10563561 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other downstream 8756 11705547 ~ 11714032 (+)
foxp3a LOC108265789 other downstream 282395 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 499802 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 902907 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 2008375 13705166 ~ 13791317 (+)

Expression


Co-expression Network