G132391


Basic Information

Item Value
gene id G132391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14085652 ~ 14087881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156411
TCTGTAATTTAACACTGGAGTACATTAAGTGTGAGTTATCACACAATAATATGAAAATGGTAAACAATACATTTGTCTTTCAACCaaattaaataggcctacaatgAAGTGTCAGATCTAACACTTCACAAATAATGTTATTAGTGATGATAATTAGACAGTTATTCAATATGCTGGGGATTTATTGCTCGCTTGCGTCAgtcctgaaatggtggaaatgtaTGTtatcctgtcttttttttaggTTCTGGACAATTGAATTGTTTATCGCGATTTTATAAAGTGGTAAATGATGAGTGGGGAAAAATTAATACCTCACAAGCCTAGTTATAATAATCCAGTAAGTTACAATAAACTTtcaaatgtggggaaaaaacaaaggaGTGGAGAACCCTTATGTTCTGTTGACTGGCTGTTCTTGTTGCATCAACTCATCTCTTTTGGTATTACAGACATGGGTCATTGGTCATTTTGACCTCAGCTTAGGTTATTCTGACTTGAACACAACATAAGGGTTTAGATAAGTGAACTGGTTCATACTTGATTCATAATCACAgtttgtgtgtgcctgtgtgtccTTACTTGACTATGAAGTCGAACTCGGATCCTGCCAGCATGAGCACTCCAAGCAGGGTAGAGAAGGCTCCGTCCAGAACAGGGGCAAACATGTGCTCCAGGGCCAGCACCGCCCGCTTATTTCTGTCCCCTATGGCAGTGAGGAAGGCCTGTATGGAGCACTGGGAAGTCAGAACGCAACCAGACCTGCACTtacagtgccctccagaattacACCCTTtttgaaaatgagcaaaatctGATAATAAAAAGAATAGCATATGTACTCtgtgatattttgagctcaaACATACAGAAGAGTATAACAGCAatgagtctcttcctgtaatgtctaacaaggttggagacGTGTATAACAGGATCTTGGTCCACACCTTCAAAACATTTTAAGCTCCTATATATTCTTATGTTAATACATGTGGACTTCCCgcttcaattcagaccacagcTTTTCTTTGACTGAGATAGTCATCGTACAACACTGATTTTGTGattcttttctcatttctgtgttgatATGGAAGTCTGTTTGGCTCAGTGTTTTGTTGAAAGCCAAGTCTGGACCTCCTGGCAGAAGCAACCAGGTTTTGAGCAGAAATATCCTGCtacttagcagaattcatggtgACATTAATCTTTATAAGAGCCCCTGAACTACCAGCCAAAACAAGCCCCAAAGCATCAATGAACCACCAGCACATTTTACAGTGGGGTATCAAGTGCTTTTCCTTGTATGCCATCCCCTTTTGTCATTAAATATGATGGTGTGCATGAgcaaaaagttcaattttagtTTCATCTGATTACAACACACAATACCTGTTGTAGTTTTAATGAAGTTACACTGTGAAGTTCACTGTGAAGTTCAGGTGTTGAGTTTCGTGAGATGCTCTTAAGAAAGGCTTCTTTCTTGCAATGCTTTTAAATAGCTTTCTGTTATGAAAGTGGTGTTTAACAGTTGATTATTAAACTTGACAACCAGAAGACTAAACTGTGCAATTCTAAAACTGTGACCATTTTTGTGTTGaaagttctttggtttttctCATGGtaatggatatatatatacacaccccaggtAAACAGGACATGGTTAAGATAACTGGGGACTGACAtcaaaagagttttttttattatttaaaatattccttagAGGTGTCTTAATTTTTTAGAtgtatttttgagagaaaatactattatttcaAAGGTAGTTCTAATTTTTGTTTGAACAAAGATAAATAGTTTCTCCTATTGTTGAATtattgtgtcatttttattttacacaattatttttgctcatttttatgaagtgtGCCAATAATAAAGGAGAGCACTGCAGACAAAATTTGTGTGTGAATCAGAGAGAGATCCAACCAACTCACCAGGGCCACGTGGACGGTAAATTCCACACCAATGCCCACAGAAGCAATCAGGATGACCACGGGTACAGCGCTAAGCTTGATGCCAATCAGCCCCATCATGCCGAACAGCTCCACCGTCATCAGCGACAACACTAACACCTGGTAAAGATcgaatgtataaaaatgtcattcaaGGTATAAAACTTTATATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156411 True 2150 lncRNA 0.38 2 14085652 14087881

Neighbor

gene id symbol gene type direction distance location
lrif1 lrif1 coding upstream 199985 13879111 ~ 13885667 (+)
apex2 apex2 coding upstream 207692 13873546 ~ 13877960 (+)
csde1 csde1 coding upstream 217532 13838338 ~ 13868120 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding upstream 252355 13823098 ~ 13833297 (+)
magixa LOC108265805,LOC108437579 coding upstream 396723 13616604 ~ 13688929 (+)
ercc6l2 ercc6l2,LOC107689281 coding downstream 66977 14154858 ~ 14171793 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding downstream 111822 14199703 ~ 14232129 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding downstream 178744 14266625 ~ 14269429 (+)
prf1.5 LOC108265013 coding downstream 185107 14272988 ~ 14279281 (+)
ap3s1 ap3s1 coding downstream 833262 14921143 ~ 14937444 (+)
G132357 NA non-coding upstream 72031 14010503 ~ 14013621 (+)
G132138 pdzd4,LOC108437581 non-coding upstream 286036 13794582 ~ 13799616 (+)
G132136 NA non-coding upstream 291347 13793156 ~ 13794305 (+)
G132139 NA non-coding upstream 292943 13791862 ~ 13792709 (+)
G132115 NA non-coding upstream 514680 13570392 ~ 13570972 (+)
G132361 NA non-coding downstream 29094 14116975 ~ 14120415 (+)
G132405 LOC108265425 non-coding downstream 145147 14233028 ~ 14234254 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding downstream 157695 14245576 ~ 14246134 (+)
G132424 NA non-coding downstream 161241 14249122 ~ 14249815 (+)
G132569 NA non-coding downstream 172398 14260279 ~ 14260655 (+)
aopep c5h9orf3,cunh9orf3 other upstream 62965 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 136844 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 294335 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1480947 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1855651 12196593 ~ 12230001 (+)
G132595 atoh1 other downstream 234291 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 852420 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 891952 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 1291061 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1914180 16002061 ~ 16018818 (+)

Expression


Co-expression Network