G134341


Basic Information

Item Value
gene id G134341
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17296111 ~ 17296883 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158711
GGGGGGGTCTCCCTGTTTGGACAGACTGGAACACTTGCTGGTACTGTTCAATTGTACGGTGCTCCATTGGGGCATGTACAAGGGGGCCAACATAGCCATGAATGTCCCCCAGTATTGTGAACACTTGGCTGTAGGGGCATGTGCATGACTTGAATGTTGCATCCATGTACAGTGTTCTACAGCGTTGCAGCTGTCTTATGATATCCTCTGTGGCAAATGCTGCTATGCCCCACTCATTGTCTTGATGCAAGAGGAAGTGGTCTTGGCCCCATGTCTCAGCCCACTGGCCTGCAATCCTTACATCATCAATTGTAGCTGGGATGGGAGGCATTACCGCAGCTCTGCCTCTGTGCATAACAGATCTAACTGACAGAAAGCTTGGCACAGGTGGTCTGTCACCTCCACCCTGGTtctgatggcacagttgtacaTGCTCAGCATTGAAAATTCGTCGTATGGGTACTGTGGGTTCCCTCCTCacctcttcagtaactgcttggTGAAATTCAGCCTTGTTCACCATTTGCATATCAGGTGGGTGCATATGTTCACAGACCTCAAGAATTTGAATATTGGGATGGTCCTCCTTTACATCAAAGCAGTTTGTGACCAGTTTTGCTTGGCAGTTTTCTCTCCAACACTGCCACTGAATACTGTGTTCCTTGGTGTTGTGTCTATGGTGCCTAAAATTTTTCACTCTCAGTTTCTTGGCACTATCTTTGCTTCCATTTTCAAGTCTGTTGACTGCTTTTGTGTCTTCTGACTGGCAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158711 True 773 TUCP 0.47 1 17296111 17296883

Neighbor

gene id symbol gene type direction distance location
LOC117597835 NA coding upstream 214161 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 245831 17037821 ~ 17050280 (+)
cux2b cux2 coding upstream 717422 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 857027 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 898486 16376145 ~ 16397625 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 52433 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 114225 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 314503 17611386 ~ 17621646 (+)
enkd1 NA coding downstream 608921 17905804 ~ 17916639 (+)
polb polb coding downstream 631541 17928424 ~ 17939695 (+)
G134303 NA non-coding upstream 62687 17233175 ~ 17233424 (+)
G134301 NA non-coding upstream 84925 17210952 ~ 17211186 (+)
G134245 NA non-coding upstream 276215 17019679 ~ 17019896 (+)
G134242 NA non-coding upstream 279577 17016254 ~ 17016534 (+)
G134241 NA non-coding upstream 280055 17015751 ~ 17016056 (+)
G134344 NA non-coding downstream 1285 17298168 ~ 17355660 (+)
LOC117597810 NA non-coding downstream 16016 17312899 ~ 17330663 (+)
LOC117597877 NA non-coding downstream 79420 17376303 ~ 17378236 (+)
LOC117597787 NA non-coding downstream 89381 17386264 ~ 17398372 (+)
G134466 NA non-coding downstream 313970 17610853 ~ 17611055 (+)
gucd1 gucd1,LOC102792582 other upstream 427343 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 558127 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 674345 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 876602 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 1277293 16002061 ~ 16018818 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 734092 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1139302 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2190604 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2528915 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2883885 20180768 ~ 20185618 (+)

Expression


Co-expression Network