polb (polb)


Basic Information

Item Value
gene id polb
gene name polb
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17928424 ~ 17939695 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925792.2
TACTATGCAGTCGAGTCATCGACGGCATTAGTGACGTCTTATTGTCGCGACGAGCTGTGAGAAATCGCTTTGTTTTCAGGCTTTAAGCCTCGTCTGACTCATTTGTCTGAcattgattaaataaaaacactcctAAGTGATTCGTTACTGAACGTCAAGAACAGCGATGAGTAAACGGAAAGCGCCGCAAGAAACTTTAAATGAGGGAATCACGGACTTTCTTGTTGAACTGGccaattatgaaaaaaatgtaaacagggCCATCCATAAGTACAATGCATACAGAAAAGCTGCTTCTGTGATTGCTAAGTACCCACATAAAATCAAAAGTGGCACTGAAGCCAAGAAACTGGATGGAGTTGGTGCAAAGATTGCTGAGAAAATTGATGAGTATTTAACCACAGGGAAACTCCGCAAACTGGAAAAGATTCGCAATGATGACACCAGCTCCTCTATCAACTTTTTAACTAGAGTGACTGGAATAGGCCCGGCTGCTGCAAGGAAGTTCTATGATGAAGGTGTCAGGACCCTAGATGATCTGAAGAAGATTGAACATAAGCTGAATCATCATCAACAGATTGGCCTAAAATATTTTGAAGAATTTGAGAAGAGAATTCCCCGCTCAGagatggagaaaatggagGCTTTGATATTACATGAGTTGGAGCAGCTTGACCCACAGTACATTGGCACCATCTGTGGCAGCTACAGGCGAGGAGCAGAGTCGAGTGGAGATATTGATATACTGCTGACTCACCCAGACTTTACCTCCCAATCCCAAAAACAACCCAGGCTGCTCCGTGCAGTGGTGGAGCACCTTGAGTCTATTGGCTTTGTCACTGATACATTGTCCAAAGGAGAAACAAAGTTCATGGGTGTATGCCAGCTGCAAAGAGGAGTTGAGGAAGAGAAGGATCATGATCATCGCCGTATTGATAtcagGCTCATTCCTAAGGATCAATATTACTGTGGTGTGCTCTACTTCACTGGGAGTGATATATTCAATAAGAATATGAGAACCCATGCTCTTGAAAAAGGCTTCACCCTTAATGAGTACACTATTCGTCCACTAGGAGTCACTGGTGTGCCTGGAGAGCCCTTGTTGGTGGACAGTGAGAAGGACATATTTGACTACATCCACATGAAATACAGAGAGCCAAAAGAACGCAgcgaataaaataaaaaaaaaaaaagaaaggttttgTTAGCAAACTTGTTGATGCCTCAGTAAAATTGCCTTCAAGTGACATAGTACAAGaaagtgtcgtgtgtgtgtaaagtagcAAGAATATTATGTAGTGGGTAGGAtaggtttttgtgtttttaatgtgtttttagtgtgtgtgtgtgtgttttcttttttttttcttttttttttctttttttataaagtttaacCATATCAGCAATAAGTTGGTAtaatttaaattcttttattttttttttgtcatttgttcaatattttgtttaggAAAGTGCTTTTTGAAACTATTGTTATTTTAACAATTGCCATTCTTTATTAAGGTGCTTTAATGAGGAGGACAAGTACATTTCCAACAAACTGTTACTGATAGACACATCAACTTATGTGTCAAAGTCTACTCATGTATTATTGCAGCTGGTTTTAGTATTCATTAATGTTTATCTTGACTATTTAGTGTTCATGTGATTGGATTGTTGGTTTTTGcaacatttgatttgattattaaaCACCACAACCATAATGGATGCTTTGCTTAAAGCTTGTTgaaaacagtgctgtggaaaTAGTTTCAGTTAGTATTTTACACCTGACACTTATTGAAGTACAGTGCTTGTGCTGCTATtctacaatggatataaaaagtatacacaGCCCTTTTAAAATTGAAGGtttttgttatgtaaaaaatgaaaccaggaTAAGTcatccacctttaatgtgatctagcaaccaacaaaataaatttttttaatttaacaaaaataaattgaaacattttagtgggaaaaaaaagaaaaaacaactttaaaattttgttaaatCGCTTTTTGTTTGTAATACAACATTGAGtgttttgggtaagagtctaccaaccaCATCTAGAtttggccttttttttccccactcgtccttgcaaaaatgctctaGATCTATCAAAGTGAGAGGAGATCTCCTCTGGACAGCtgtcttcaagtcattccacaggtttttgataggatttagatctgtgCCATTTCAAAATGTTGATCTTCTGAAGCCAtacctttgttgacttggatttatCCTTTGGGTGgttattgtgctggaaggtgatATATtgcttcatcttcagctgtctaacagagatGTGCAGGTTTTGTGCATAAATAGATTGATAGatggaatcatggatagctccaaatatcTTGACTAGGGCCGCAGCCCCATagcgtgatgctgccaccaccatgcttccaTAAATATCCAagatgtgaagaatatgagagattgtcaCATGCAAGGAGTGACCAATCCTGGCCAGATATTCcattaatgttgccgtaggtctcgtggcagcctccctgataagttttcctcatgttccatggtatatctaatgttttggaaattctttggTACTTTTGTCTGAGCAATACTTTTTGAactgagatcctgtacatgctttgtttCTTTGATGTCCAGAAAATCCTACAGTagcagctgatctttatttggggttaatcaggaTCATTACATTGATGACaagtgtatgataattactttgaacatgagtttaaatgtgattggttaGTTCTGTGCACCGTCATGCACACTtagcaaccaggttattgtaagttttttatttttcattttttgcctaaaataattctgtttgtttttcacttgaattttgttggttgctatattacattaaaggtgggaaaagatctgacacgCTTTATCTTGGTTACAGTTTTAggtcacaaaaacctgcaattttaacaggagtaGACTTTTTATGTCCACTGTATCTTTGCGTGCTCCATAGTGTACATAGGACCAAGTCTGTGTAACTTGTTTGAAACGTATGAAAAGTTTTGAAAAGTTTTATCCTTTTTGCAGTCTTCAAATgtaaaacccagggctcaaaccaaagCTGTGTCCAAAATCGCATACTGTGACAGTACCTTTTGCATTtgattcagtacctactgctTGGCTGTTGATACAGTATGTACTGACCAGTATATGTGTTGAGTATGAATACAATCCGGACATACTACTTGTGCCATGTTGGCATTGTCATGTGACATATGGCATCATAGTAACTGTAAAAACTCAAAGAGCCCACCAGATTAGAGCAACTGTTTTTTCTTGTTCAACAAATTAACAGTTTACTCAGGTGTTGTTAAACAAATATGGTTTATCCACAAGGAACAAAGAACAATATTTTATACCTATAGCACTTGCACTTAAAAAGAGCCGACGCGCTGCCTTCCGCCATAGCACAGTGTCCATTGTTTCCATACTGCAGAATCTCGGTCATCAGTTTAGTTTTGTTCAAGTCACTGGCATCTTCATCAACTGTTGTTTTACTAAATAACACTACAGATTTGACACTGTACCTCCCCTGAATGTGGAATGAAATTTTGTCATTGTTCTGAAA
>XM_026925793.2
TCGAATACATTTAGCTTTAATCCATCTTTAAACAGTTGCACCTTTATCTGGTTGGGTAGCTGCATTTTAGTTAGCTGGCGTGGGTAACGATAAAGGTGAGGTGTTTTGATAGGGCTATCCCAGACTTCTAAATTTCACAAGCTTTCGCTTTTTAATCGGTTACTCATTCATTCCAGCGCAAGGGATAAAATCAGCTACAGGTCGAGTACTTCAGTTAATCTTTAAATCAAAGATCagaatggttgttggtgccagaagggctggtttgagtatttcagaaactgctgatctcctgggattttcaagcacaagggtctctacagtttacagagaatggtgcgaaaagcaagcaaacaaacaaacatgcagtGAGAGGCAGTTCCTCGGGTGGAAACCCCGAGGTTGATGAGAGAACTGGccaattatgaaaaaaatgtaaacagggCCATCCATAAGTACAATGCATACAGAAAAGCTGCTTCTGTGATTGCTAAGTACCCACATAAAATCAAAAGTGGCACTGAAGCCAAGAAACTGGATGGAGTTGGTGCAAAGATTGCTGAGAAAATTGATGAGTATTTAACCACAGGGAAACTCCGCAAACTGGAAAAGATTCGCAATGATGACACCAGCTCCTCTATCAACTTTTTAACTAGAGTGACTGGAATAGGCCCGGCTGCTGCAAGGAAGTTCTATGATGAAGGTGTCAGGACCCTAGATGATCTGAAGAAGATTGAACATAAGCTGAATCATCATCAACAGATTGGCCTAAAATATTTTGAAGAATTTGAGAAGAGAATTCCCCGCTCAGagatggagaaaatggagGCTTTGATATTACATGAGTTGGAGCAGCTTGACCCACAGTACATTGGCACCATCTGTGGCAGCTACAGGCGAGGAGCAGAGTCGAGTGGAGATATTGATATACTGCTGACTCACCCAGACTTTACCTCCCAATCCCAAAAACAACCCAGGCTGCTCCGTGCAGTGGTGGAGCACCTTGAGTCTATTGGCTTTGTCACTGATACATTGTCCAAAGGAGAAACAAAGTTCATGGGTGTATGCCAGCTGCAAAGAGGAGTTGAGGAAGAGAAGGATCATGATCATCGCCGTATTGATAtcagGCTCATTCCTAAGGATCAATATTACTGTGGTGTGCTCTACTTCACTGGGAGTGATATATTCAATAAGAATATGAGAACCCATGCTCTTGAAAAAGGCTTCACCCTTAATGAGTACACTATTCGTCCACTAGGAGTCACTGGTGTGCCTGGAGAGCCCTTGTTGGTGGACAGTGAGAAGGACATATTTGACTACATCCACATGAAATACAGAGAGCCAAAAGAACGCAgcgaataaaataaaaaaaaaaaaagaaaggttttgTTAGCAAACTTGTTGATGCCTCAGTAAAATTGCCTTCAAGTGACATAGTACAAGaaagtgtcgtgtgtgtgtaaagtagcAAGAATATTATGTAGTGGGTAGGAtaggtttttgtgtttttaatgtgtttttagtgtgtgtgtgtgtgttttcttttttttttcttttttttttctttttttataaagtttaacCATATCAGCAATAAGTTGGTAtaatttaaattcttttattttttttttgtcatttgttcaatattttgtttaggAAAGTGCTTTTTGAAACTATTGTTATTTTAACAATTGCCATTCTTTATTAAGGTGCTTTAATGAGGAGGACAAGTACATTTCCAACAAACTGTTACTGATAGACACATCAACTTATGTGTCAAAGTCTACTCATGTATTATTGCAGCTGGTTTTAGTATTCATTAATGTTTATCTTGACTATTTAGTGTTCATGTGATTGGATTGTTGGTTTTTGcaacatttgatttgattattaaaCACCACAACCATAATGGATGCTTTGCTTAAAGCTTGTTgaaaacagtgctgtggaaaTAGTTTCAGTTAGTATTTTACACCTGACACTTATTGAAGTACAGTGCTTGTGCTGCTATtctacaatggatataaaaagtatacacaGCCCTTTTAAAATTGAAGGtttttgttatgtaaaaaatgaaaccaggaTAAGTcatccacctttaatgtgatctagcaaccaacaaaataaatttttttaatttaacaaaaataaattgaaacattttagtgggaaaaaaaagaaaaaacaactttaaaattttgttaaatCGCTTTTTGTTTGTAATACAACATTGAGtgttttgggtaagagtctaccaaccaCATCTAGAtttggccttttttttccccactcgtccttgcaaaaatgctctaGATCTATCAAAGTGAGAGGAGATCTCCTCTGGACAGCtgtcttcaagtcattccacaggtttttgataggatttagatctgtgCCATTTCAAAATGTTGATCTTCTGAAGCCAtacctttgttgacttggatttatCCTTTGGGTGgttattgtgctggaaggtgatATATtgcttcatcttcagctgtctaacagagatGTGCAGGTTTTGTGCATAAATAGATTGATAGatggaatcatggatagctccaaatatcTTGACTAGGGCCGCAGCCCCATagcgtgatgctgccaccaccatgcttccaTAAATATCCAagatgtgaagaatatgagagattgtcaCATGCAAGGAGTGACCAATCCTGGCCAGATATTCcattaatgttgccgtaggtctcgtggcagcctccctgataagttttcctcatgttccatggtatatctaatgttttggaaattctttggTACTTTTGTCTGAGCAATACTTTTTGAactgagatcctgtacatgctttgtttCTTTGATGTCCAGAAAATCCTACAGTagcagctgatctttatttggggttaatcaggaTCATTACATTGATGACaagtgtatgataattactttgaacatgagtttaaatgtgattggttaGTTCTGTGCACCGTCATGCACACTtagcaaccaggttattgtaagttttttatttttcattttttgcctaaaataattctgtttgtttttcacttgaattttgttggttgctatattacattaaaggtgggaaaagatctgacacgCTTTATCTTGGTTACAGTTTTAggtcacaaaaacctgcaattttaacaggagtaGACTTTTTATGTCCACTGTATCTTTGCGTGCTCCATAGTGTACATAGGACCAAGTCTGTGTAACTTGTTTGAAACGTATGAAAAGTTTTGAAAAGTTTTATCCTTTTTGCAGTCTTCAAATgtaaaacccagggctcaaaccaaagCTGTGTCCAAAATCGCATACTGTGACAGTACCTTTTGCATTtgattcagtacctactgctTGGCTGTTGATACAGTATGTACTGACCAGTATATGTGTTGAGTATGAATACAATCCGGACATACTACTTGTGCCATGTTGGCATTGTCATGTGACATATGGCATCATAGTAACTGTAAAAACTCAAAGAGCCCACCAGATTAGAGCAACTGTTTTTTCTTGTTCAACAAATTAACAGTTTACTCAGGTGTTGTTAAACAAATATGGTTTATCCACAAGGAACAAAGAACAATATTTTATACCTATAGCACTTGCACTTAAAAAGAGCCGACGCGCTGCCTTCCGCCATAGCACAGTGTCCATTGTTTCCATACTGCAGAATCTCGGTCATCAGTTTAGTTTTGTTCAAGTCACTGGCATCTTCATCAACTGTTGTTTTACTAAATAACACTACAGATTTGACACTGTACCTCCCCTGAATGTGGAATGAAATTTTGTCATTGTTCTGAAA

Function

symbol description
polb Enables DNA-directed DNA polymerase activity. Predicted to be involved in base-excision repair and double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA biosynthetic process; DNA repair; and DNA replication. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human POLB (DNA polymerase beta).

NR:

description
PREDICTED: DNA polymerase beta

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006284 base-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K02330 POLB; DNA polymerase beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925792.2 False 3629 mRNA 0.37 14 17928424 17939695
XM_026925793.2 True 3814 mRNA 0.38 14 17928821 17939695

Neighbor

gene id symbol gene type direction distance location
enkd1 NA coding upstream 11785 17905804 ~ 17916639 (+)
lhx2b lhx2,lhx2b coding upstream 306778 17611386 ~ 17621646 (+)
crb2b LOC108264959 coding upstream 479362 17411108 ~ 17449062 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding upstream 575834 17349316 ~ 17352590 (+)
LOC117597835 NA coding upstream 846474 17061058 ~ 17081950 (+)
plat plat coding downstream 148246 18087941 ~ 18118075 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding downstream 204352 18144047 ~ 18191595 (+)
vsig8b LOC108265910 coding downstream 264462 18204157 ~ 18215143 (+)
acaa2 acaa2,LOC107671002 coding downstream 302234 18241929 ~ 18251704 (+)
rpl6 rpl6,LOC107699672,LOC107671003 coding downstream 313051 18252746 ~ 18258724 (+)
G134557 NA non-coding upstream 26519 17901705 ~ 17901905 (+)
G134553 NA non-coding upstream 30825 17897388 ~ 17897599 (+)
G134551 NA non-coding upstream 31982 17896233 ~ 17896442 (+)
G134550 NA non-coding upstream 32493 17895711 ~ 17895931 (+)
G134540 NA non-coding upstream 51697 17876374 ~ 17876727 (+)
G134586 NA non-coding downstream 7636 17947331 ~ 17947962 (+)
G134604 NA non-coding downstream 92230 18031925 ~ 18039306 (+)
G134598 NA non-coding downstream 134440 18074135 ~ 18084479 (+)
G134655 NA non-coding downstream 182184 18121879 ~ 18122161 (+)
LOC113533180 NA non-coding downstream 330801 18270496 ~ 18271764 (+)
G134341 NA other upstream 631541 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1059656 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1190440 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1306658 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 1508915 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 91280 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 496490 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1547792 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1886103 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2241073 20180768 ~ 20185618 (+)

Expression


Co-expression Network