G135287 (LOC108265174)


Basic Information

Item Value
gene id G135287
gene name LOC108265174
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19487487 ~ 19502643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU159806
ATGGCCAGTTGGTAACACTCAATGAGTGCATTTATAGACATATGTATCAGTCCAAATATGTCCTGTTGAATGACATTGATGAGATCATCATGCCCTATAAGTATGCTAACCTTGCTTTTCTGATGGAGGATCTGCAACAGGAGCACAGATATGTGACTGTATTTATCATAGAGAACCACATATTCCCCAAGACACAGTTTGAAGAAAGTGGCAAGTTTCGCAGGCCAGAATGGAAAAATATTCCTGGTATCAATATTATGGAACACATTTACAGAGAACCAGACAGAAAGAACATCTACAACCCCACAAAGATGATCATCAACCCCAGGAACATGCTGCAAACCTCAGTGCATTCCAGCCTGCAACACATTGGAAAGGTCTATCGGGTTCCTCCCGATGTGTGTAGGATCATTCATGTGAGAACACCACTACAGAGGAGTCTTACCAAGGAGCAATTATTTGTTGACACAAGAGTGTGGGACTTTGCACAAGAGCTGATAACAAATGTTAATAGGGCAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108265174

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159806 True 519 TUCP 0.42 2 19487487 19502643

Neighbor

gene id symbol gene type direction distance location
LOC117595725 LOC108265174 coding upstream 67549 19418750 ~ 19419938 (+)
LOC113533125 LOC108265174 coding upstream 83442 19398738 ~ 19404045 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding upstream 97825 19270626 ~ 19389662 (+)
zbtb34 LOC108265239 coding upstream 222851 19245748 ~ 19264636 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 287382 19143547 ~ 19200105 (+)
map3k12 map3k12,LOC107715569,LOC107711606,LOC107663586 coding downstream 75359 19578002 ~ 19598056 (+)
stac3 stac3,LOC108265245,LOC108411943,LOC107751515,LOC105894341,LOC107711514 coding downstream 168778 19671421 ~ 19682627 (+)
LOC113533240 slc32a1,LOC107564828,LOC104945949,LOC107735778 coding downstream 221379 19724022 ~ 19730524 (+)
bpifcl LOC108265236 coding downstream 227980 19730623 ~ 19755646 (+)
LOC113533655 LOC108266029,LOC108434414 coding downstream 359459 19862102 ~ 19928774 (+)
G135309 NA non-coding upstream 1030 19485898 ~ 19486457 (+)
G135292 NA non-coding upstream 2553 19408554 ~ 19484934 (+)
G135169 NA non-coding upstream 164216 19321962 ~ 19323271 (+)
G135164 NA non-coding upstream 217819 19269334 ~ 19269668 (+)
G135101 NA non-coding upstream 532286 18949227 ~ 18955201 (+)
G135341 NA non-coding downstream 55591 19558234 ~ 19559272 (+)
G135363 NA non-coding downstream 112232 19614875 ~ 19615657 (+)
G135352 NA non-coding downstream 116672 19619315 ~ 19627828 (+)
G135353 NA non-coding downstream 122661 19625304 ~ 19698739 (+)
G135393 NA non-coding downstream 201619 19704262 ~ 19704467 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 805555 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 1438598 18030975 ~ 18048889 (+)
G134341 NA other upstream 2190604 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 2618719 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 2749503 16716133 ~ 16737984 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 323155 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 678125 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 719772 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1241937 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 2278580 21781223 ~ 21797808 (+)

Expression


Co-expression Network