LOC113533164 (abracl,LOC107727609,LOC107558932,LOC107553474)


Basic Information

Item Value
gene id LOC113533164
gene name abracl,LOC107727609,LOC107558932,LOC107553474
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20180768 ~ 20185618 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU160256
CGTCAGCACGAGCTCCATTTATGGTGTTTTTCACTTCAAACGTGAATCGAGTCCCAACGCTTCAGCTTCAGGCTTTAAAAATATCCTCATCTAGtgaaaaaaatgaatgtggaTCATGAGGTCACACTCCTGGTGAATGAGATTCGTAGGCTTGGCAGCGAAAATGCAGATGGTAAAATCAGTGTCAAATTCGGTGTCCTATTCAATGATGACAAGTGTGCCAACCTCTTCGAGGCACTCGTTGGAACACTGAAAGCAGCCAAGCGAAAGAAGGTCATCACGTTTCAGGGCGAGCTCTTGCTGCAAGGAGTTCATGACAATGTTGATGTTATATTACTGCAGGAATGAACTGAAGAACTGGCCTGTATCTTCTTTGtatacttttataaatatgGTTTTGCTGAGGGGAATGAGTGCTTTTTGACCAAacgtcttgttttttttaatgaacaacgCCAC
>XM_026925089.2
ACTCCAGCTGAAGGCTTGTGCGTGACGTCAGCACGAGCTCCATTTATGGTGTTTTTCACTTCAAACGTGAATCGAGTCCCAACGCTTCAGCTTCAGGCTTTAAAAATATCCTCATCTAGtgaaaaaaatgaatgtggaTCATGAGGTCACACTCCTGGTGAATGAGATTCGTAGGCTTGGCAGCGAAAATGCAGATGGTAAAATCAGTGTCAAATTCGGTGTCCTATTCAATGATGACAAGTGTGCCAACCTCTTCGAGGCACTCGTTGGAACACTGAAAGCAGCCAAGCGAAAGAAGGTCATCACGTTTCAGGGCGAGCTCTTGCTGCAAGGAGTTCATGACAATGTTGATGTTATATTACTGCAGGAATGAACTGAAGAACTGGCCTGTATCTTCTTTGtatacttttataaatatgGTTTTGCTGAGGGGAATGAGTGCTTTTTGACCAAacgtcttgttttttttaatgaacaacgCCACTATCACAAAATAGTCTATGATAATCCTTTAGATGTGTGACTGCAACACAAAatgcatattgtgtgtgtgttt

Function

symbol description
abracl Predicted to be involved in regulation of actin filament-based process. Orthologous to human ABRACL (ABRA C-terminal like).

NR:

description
PREDICTED: costars family protein ABRACL

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160256 False 459 lncRNA 0.42 3 20180793 20185546
XM_026925089.2 True 556 mRNA 0.42 3 20180768 20185618

Neighbor

gene id symbol gene type direction distance location
bsna bsn,LOC108265177 coding upstream 9399 20051109 ~ 20171369 (+)
LOC113533168 LOC108265115 coding upstream 241765 19931379 ~ 19939003 (+)
LOC113533655 LOC108266029,LOC108434414 coding upstream 251994 19862102 ~ 19928774 (+)
bpifcl LOC108265236 coding upstream 425122 19730623 ~ 19755646 (+)
LOC113533240 slc32a1,LOC107564828,LOC104945949,LOC107735778 coding upstream 450244 19724022 ~ 19730524 (+)
LOC113533362 apeh coding downstream 3182 20188800 ~ 20209345 (+)
tlr9 LOC108265704 coding downstream 24138 20209756 ~ 20215905 (+)
wnt5a wnt5a,LOC108411772,LOC107553896,LOC107693599,LOC107750813 coding downstream 269686 20455304 ~ 20467426 (+)
LOC113533338 lrtm1 coding downstream 361687 20547305 ~ 20560196 (+)
parapinopsina LOC100304471,LOC108411942 coding downstream 518882 20704500 ~ 20733204 (+)
G135643 LOC107737118 non-coding upstream 165998 20014522 ~ 20014770 (+)
G135641 NA non-coding upstream 168001 20012567 ~ 20012767 (+)
G135524 NA non-coding upstream 175060 20005119 ~ 20005708 (+)
G135466 NA non-coding upstream 463789 19716637 ~ 19716979 (+)
G135393 NA non-coding upstream 476301 19704262 ~ 19704467 (+)
G136057 NA non-coding downstream 751505 20937123 ~ 20939070 (+)
G136056 NA non-coding downstream 761686 20947304 ~ 20965468 (+)
G136429 NA non-coding downstream 1161227 21346845 ~ 21347161 (+)
G136433 NA non-coding downstream 1175221 21360839 ~ 21361880 (+)
G136466 NA non-coding downstream 1489240 21674858 ~ 21693702 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 278401 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 678125 19487487 ~ 19502643 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 1498836 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 2131879 18030975 ~ 18048889 (+)
G134341 NA other upstream 2883885 17296111 ~ 17296883 (+)
LOC113533440 erc2,LOC108264953 other downstream 36797 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 558962 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 1595605 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 1640064 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 1906977 22092595 ~ 22123751 (+)

Expression


Co-expression Network