cdc45 (cdc45,LOC107670985,LOC107699634)


Basic Information

Item Value
gene id cdc45
gene name cdc45,LOC107670985,LOC107699634
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16305827 ~ 16315310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910720.2
aagctccgcccacttgtTCACAAACGAATTTGGCGCCAGAGTTTCAACTCTGCGCTAAACAAGAGAGTTTTTAAACTGAAGCTATTATTGCGGGGAAGTGTTGAATTGTGTGTTGAAGATTTTATGTCGGTTATTTAAGATGTTTGTAACAGATATTCGAAAAGAATTTTATGATGTTGTGGTTAATCAGAGAGTGGCTCTGCTCGTGTCCTCGGACATCGACGCGCTGTGTGCGTGTAAAATCCTACAGGCTTTGTTCCATTGCGATCAGGTGCAGTACACACTGGTTCCTGTGACAGGATGGCAGGATCTCGCTACAGCTTTTCTGGAACATAAGGAACAGTACAGATATTTTGTCCTGATGAATTGTGGGGCAAATGTGGACCTGTTGGAGACTCTCCAGCCTGAAGAAGACTCAGTGTTCTTCATCTGTGATACCCACAGGCCTGTAGATGTGGTGAACGTTTACAACGACACACAGATCAAACTGCTAATTAAGCAAGACGATGACCTTGGTGTGCCCTCCTATGATGATATTTTCcgtgatgatgaggatgaagacAGCGATGGAGGGGATTCTGGGAATGAGAGTGATGGTGGCTCAGAGCCATCTGGGAAGCGACGGCGTTTCGATGAGGGGGCACTGGAGAGGAGAATCGAGCGTCAGAGAGCGAGGAGAGAGTGGGAGGCTCGAAGGAGGGATATCCTGTTTGATTATGAACAGTATGAGTACCATGGCACTTCAGCTGCAATGGTTATGTTTGAGCTGGCCTGGGTTATGACCAAAGACACCAGGGACATGTTGTGGTGGAGCATCATTGGTCTGACTGATCAGTGGGTTCATGAAAAAATCACACATATCAAGTATGTAACGGACATCGCTACTCTGCAAAGGCACGTGTCTCGCCATAACCATCGCAATGAGGATGAAGAGAACTCTGTCTCTATCGACTGCATGAGGATCACTTTTGAATACGACTTGAGATTGGCTTTGTACCAACACTGGTCACTGTATGAGAGCATCTGCAACTCCTGCTACACCTCCTGCTGTTTTAAACTCTGGTCTATCAATGGGCAAAAGAAACTGCAGGAATTCCTGGCAGACATGGGCCTCCCACTCAAACAGGTGCGACAGAAGTTTAACTCCATGGACATATCAATCAAAGAGAACCTGCGTGAGGTCATCGAGGAATCCTCCAACAAATTTGGTATGAAGGACATCCGCGTACAGACGTTTGGCGTGCACTTTGGCTTTAAGAATCGCTTCTTGGCGAGTGATGTGGTGCATGCTGCTGCTGCCCTGCTGGAGAATGTGGAGAAGGATGAGACTGCCACAGACAACTTCATCAAAGCTCTGGATTGCCTCTCAAGgagtaaCATAGAAAGGCTGCATTTGGGAATTGATCTTGCTAAGAAAAAGCTGAAGGCTATTCAGCAGACAGTCGCCAGCTGCATCTGCACTAATCTCATTCTCTCACAAGGACCctttctttactgccatctactggagGGAACACCAGATGTAAAGCTCTTTTCCAAGCCTTTGGCCCTGACTCTGCTCTGTAAATACCTGCTCAAGGCCTTTGTCTGCTCAacTCGGAATAAGCGCTGCAAGCTGTTGCCGCTCATTATGGCTGCTCCTATGGATGTGGAGAAGGGCACTGTCATAGTGTTAGGCATTCCACCAGAGTCTGAGACCTCTAACAAGAAAAATTTCTTTGGCAGGGCCTTTGAGAAAGCTGCTGAAAGTACAAGCTCCAGGACACTGCACGATCACTTTGACACTTCAATTATTGAGCTGAAGATGGAAGACAAAGGAAAATTTCTTGATGCCCTCATTACCCTGCTGTCCTAACGCCTCACTGCATGCCTCAAGCCtccctcaaacatcacacaccaaaAGAACATTGAGAACTAGGCTATACTTGATATGTCACCTGACTTGGTCTCTTGCAGGAAGAATTCTGTATGTGAATGGAATTTTACATTGGTTGAGAGCAAATATGAGATTTAACATGTTTCCTGTCAGTTTGGTGCCagatttgtgagtgtgtgtgcatgtggagcTGGGCTCCTGAAGACGTTGACCAGTAGTGGGCACACATTTACTACAGGTGTTTTTGTCATCTGATACAAGTCATGCACTTCTGACATTTTGTAtgtgtattatactgtacattcatttgattttgttgtagttttaatgttttggtgtttgtttttacatgtgAAACTCAATATAAGAATCATGTACTCAATAATAAATGGTGTATTATTAACTTA

Function

symbol description
cdc45 Predicted to enable DNA replication origin binding activity; chromatin binding activity; and single-stranded DNA binding activity. Predicted to be involved in DNA-dependent DNA replication; double-strand break repair via break-induced replication; and regulation of chromatin silencing at telomere. Predicted to act upstream of or within DNA replication and cell division. Predicted to be located in nucleus. Predicted to be part of DNA replication preinitiation complex. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 7. Orthologous to human CDC45 (cell division cycle 45).

NR:

description
cell division control protein 45 homolog

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0006270 DNA replication initiation biological_process

KEGG:

id description
K06628 CDC45; cell division control protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910720.2 True 2283 mRNA 0.45 18 16305827 16315310

Neighbor

gene id symbol gene type direction distance location
ciao1 ciao1,LOC107714582,LOC107671031 coding upstream 4156 16294460 ~ 16301671 (+)
igsf9b LOC108265804,LOC108430342 coding upstream 35740 16232101 ~ 16270087 (+)
tmem230b tmem230,ct030,LOC101077900,LOC106579885,LOC105894893,LOC103023473 coding upstream 74602 16224614 ~ 16231225 (+)
dpysl2a dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023 coding upstream 147341 16128186 ~ 16158486 (+)
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding upstream 181250 16110372 ~ 16124577 (+)
zgc:63587 LOC108430351,LOC108265487,LOC103046559,LOC105014311 coding downstream 13432 16328742 ~ 16353557 (+)
sept5a sept5,LOC102226618 coding downstream 40386 16355696 ~ 16371741 (+)
gp1bb gp1bb coding downstream 56647 16371957 ~ 16375128 (+)
dhx37 dhx37 coding downstream 60835 16376145 ~ 16397625 (+)
rad9b rad9b coding downstream 108423 16423733 ~ 16439084 (+)
G133724 NA non-coding upstream 133294 16172290 ~ 16172533 (+)
G133722 NA non-coding upstream 134327 16171185 ~ 16171500 (+)
G133721 NA non-coding upstream 135230 16164686 ~ 16170597 (+)
G133635 NA non-coding upstream 262788 16042840 ~ 16043039 (+)
G133617 NA non-coding upstream 333718 15971860 ~ 15972109 (+)
G133842 NA non-coding downstream 15270 16330580 ~ 16362249 (+)
G133890 NA non-coding downstream 123956 16439266 ~ 16440523 (+)
LOC117597830 NA non-coding downstream 328180 16643490 ~ 16663314 (+)
LOC113533561 NA non-coding downstream 636238 16951548 ~ 16974937 (+)
G134230 NA non-coding downstream 649524 16964834 ~ 16965057 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 287009 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 921003 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1322943 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1325923 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1982377 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 87438 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 264947 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 400823 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 544666 16859976 ~ 16868768 (+)
G134341 NA other downstream 980801 17296111 ~ 17296883 (+)

Expression


Co-expression Network