loxhd1a (loxhd1b,LOC108265797,LOC108430301)


Basic Information

Item Value
gene id loxhd1a
gene name loxhd1b,LOC108265797,LOC108430301
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16072774 ~ 16085108 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916314.2
GTGGATACAGACACAGAGGAAACCTCCATGTTCTTATGTGAAAGGTGGCtctcaaaaaagaaagaagataaaAGGATTGAGAGAACATTTTATGTCAAGGTACTTGCCATTCTACCAGGGATATGAAGGTGAAAGGAATCCCCAGAATTCTAAGCCAAGCCTAGACAGCAACatgaacaagaagaaaaagaagaaaaaatcagCAGCTGTAGAGGAGGGTGCTGTTATCCCATATCACTTTACGGTGTCGACAGGATCGGACCGTGATGCTAGTACTACCAGTCGGGTCTTTGTGATCATCATAGGAGCAAATGATCTTGAAACAGACAGACTCTGGCTCGACCTTCCTGAAGGAAAGAAATGCTTTGCTGCTGAAACTATGGAACACTTTGAATGTTATGGGTTGGATGTAGGAGAAATCAAAAGAGTCGAGtTAGGCCATAATGGTGCTACTCCAGAAAGCTGCTGGCTGGTGGAGGAGCTGGCCGTGGCAGTGCCTACCAAAGGCATCAAGTATATATTCCAGTGTAACTGCTGGCTTGCCAAGGATAGAGGGGATGGTCTCACATCAAGAATGTTCAATATACTTGATGCCATCACTATTAATATAATTCAAAAgGTTATCTATGAGATTACAGTTGTTACAGGAGACGTCCAGTATGCAGGGACAGACACCAACATATTTATAACTGTATTTGGGGCCAATGGGAGCACAGAAGAGATTTTGTTACCAAAGAATGAGGACAGGtttgagagagatcagaaggACACTTTTAATTTGGAGATAGATGACATTGCTCCACTTAAAAAGCTGAGGGTTCGCATCGATGGGACAGGATGCCGACCTGATTGGTTCCTTGACAAGATTATCATGCGAAACCCAATCACTGAGGAAGTGTCGGTTTTCACCTATGAGGACTGGCTATCCAAAACGAAAGGGCCAAAGAGGACAAAGGTCTGTGAGCTCCCTGCAGTGGTTGACGATGAGGAGATGGTGGAGAAAACCACCTATATCATTCAGGTTAAAACCAGTGACATTGCTGGTGCAGGCACAGATGCTAACGTGTTCATGATTGTGTTTGGGGAGAATGGGGACACAGGCACTCTAGCACTGAAAGAATGCAGCAACAGGAACAAATTTGAGCGCAATCAGGTGGATGTGTTCCGCTTTTCAGACATCCTCAGCCTGGGAGAGCTTTCCAAGATCCGAGTATGGCATGATAATAaggGTGTTGCTCCTGGTTGGCACTTAGAAAACATTGATGTAAAAGATGAGTTCATGAGCCAAACCTTTCGATTCCCTTGTGACCGCTGGCTGGCCAAAAGTGAGGATGATGGCCAGATTATTCGGGAACTGGCCTGTGCCAACAATGATATCCTGGACCTCAGTGACAAGACCAAATATGATATTGACATTACTACAGCCAACTATGAAGGTGCAGGGACAAAGGAGAATGTGTGCATAGTGCTTGAGGGGAAAAGAGCACGTTCGAAGGAGTTTATGATGGAAAATTCTTCAAAGAAAAGGAGATTTGTGTGGGGTACAACTGACTCATTTGAGTTTTCCTCCAAACATCTGGGAGATATTGTTAGCATCTCTTTGGGCCATAtaacaaaagataaaaaagtGAAGAATGAGGCTTACTGGCATGTTGAGGAGGTGGTGGTGACAGAACAAGAGCTGGGGAACAAGTACTTTTTCCATTGTGATGCCCAGATCCTTCTCAGTACGAAGAAAGGCGAGTTTGTGACATTTGAGTGCATTAAGTGCGTTGAGAGCTTCGCCAGCAAAGTGCGCAGCTTGGTTCCCGTCAAATATGAGATTATTGTCATCACAGGTGATGTGAAGGGAGCTGGGACTGATGCCAATGTCTTCATTACCATCTATGGTGTGAACGGCGACTCAGGGAAGCATCCACTGAAGCAGAAATTTAGGAACCTGTTTGAGAGGGGCCGTACTGACCGCTTCATGTTGGAGATGCTGGACTTGGGTGATCTCCTGAGAGTAAAAGTGGAGCATGACAACACTGGCCAAGCACCAGGCTGGTACCTGGAGTGTGTAGAGATTACAAACACTGCCAACTGGGTTACCACAATCTTCGTTTGTGGAAAGTGGATGGATAAAACAAAAGCAGATGGAGAAATCGAAAGAGTTTTGTTCCCCAGATACTGACACTCGTACCTTTTTTATGAACTggttttccattttaatttacatttttcattagtttattaatttttagaaatgaatttttaaaattttaaaactatttagtACTTTTTGAATAGCAATTTGAGCCAACATTTTATCTAAATGAAATAATGGATTCGATGTAAAAGAGCCAtcttaaagcattttttaaattttatttgaaaaacacatacaa
>XM_034306612.1
TGGCCATGATGGGCGAGGTGGAGGCTGTGGCTGGTTCCTAGACAAAGTGGTGGTCAGAGAAGAAGGACAGGCTGAGTCTGAGGCTGTAGAGTTCCCATGTAATAGATGGCTTGACCGTAATGAGGATGATGGCCAGATTGTTCAAGAGTTAGTTCCATTTGCTGATGGACAAAAACTCTTTAAACTACTTTGAAACCGGCCGGGTTGATATCTTCACCATTGAGACTTTTGACATTGGACAAATTAACCGTCTGCTGATTGGCCACACCAACGAAGGCATGAGGGCAGGCTGGTTTCTGGACAGCGTACAGATCAAGGTGCCCAACCAGGGTAAACACTACATGTTCCCCAGCCATCGTTGGCTCTCTGAAGATGAGGCTGATGGCAAGACTGAAGTGGAGCTCTACCCAAGTGAAATACTTGATATTGAAAAATTAATAAACTATGAGGTTACTGTGGTAACGGGTGATGTTTGGGCTGGAGGAACCAATGCCAGTGTTTTCATCCAAATATATGGAGAGGAAGGAAAAACAGACCTTATCACCTTGAAAAGCAGGTCAAACAACTTTGAAAGAGGAACCACTGAAATATTCAAGATTGAAGCTAAAGACGTGGGAAATATCTTCAAAATCCGCATTGGCCATGATGGAACAGGAATTGGCTCTGGATGGTACTTAGAAAAGGTGGACTTGAAGTACTTGGTCATGGCCATGgtgaggaaagagaagaaagaagacaagaagaaaaacaaaaagaagaaaaagaaggaggaagaagaggatgaggagggtGAGGAAGTGATGCAGGAAGTAGTGAAGACACTTACCTTTCCCTGTGATCGTTGGCTggctgaggatgaggaggatgggGAATTGATAGTGGAGCTTCTACCTGAGGACAATGAGGAGCTAGAAGAAAACACATATGAAGTCAGTGTCTTTACGGGGAACATGTGGGGTGCGGGAACCGATGCCAACGTTTACATCAATATCTATGGTGAGAATGGTGACACTGGGGAGCGTCCCCTGAAGAAATCTAACAACCTTAACAAATTTGAGCGTGGTCATgaagacattttcacaataaAAGCAGTTGAACTGGGGCCTTTGAAGAAGCTAAGGATCCATCATGATAACAGCCATGCCAACTCAGCCTGGTACCTGGACCGAGTTGAGATTATAGATACAAAAGATGACACCACGTACTACTTCCCCTGTAACCGCTGGTTGGCTGTTGATGAGGATGATGGCCAGATTGTCAGAGAGCTGGTGCCTGTGGATGAGGCTTTCATGAAGAAGAATGAGGATGAGGAAGGGTTAGGAGCCACCTTAGGGCTGGAGCAGAAAGcCATGTCAACAACATACACACTGAAGATTAAGACTGGGGAGAAGAAATATGCCGGAACAGATGCCAATGTGTTTGCAGTTCTTTATGGAGAGTATGATGATACAGGAATTATTAACCTGAAGGCCAGCAAAACTCACAAGAATAAGTTTGAACAAGGATTCATCGATGAGTTCATTGTGGAAGCTGTTAATCTTGGAGAGCTTAAAAGGATCAGAATTGGCCATGACAATGCTGGGGGTTCAGGTTGGTTTTTGGATTGGGTGGAGATTAATGCACCTTCTCAGGGTCTGAAACTCTGTTTCCCATGTGGCCGCTGGCTGGATAAGGGAGAAGATGATGGGGCATTAGCAAGAGATTTGTACCCAGCTGAACTACAGACTGAGGTGTACACTCCATTTGTACCCTATGAGATTAAAACCTTTACTAGTGATATCTTTGGAGCAGGAACGGATGCAGATGTCTTCATTGTTCTCTATGGTGAAAATGGAGTCTGCACTCACCAAAAGTATCTCTGTGTGAATAAGAGAGAAAGGCGCATGTACTTTGAGAGGGGAGCAGAGAACATGTTCATTGTGGAACTGGAAGATGTAGGCGATGTAATTGAGAAGATTCGCATTGGACATGACAACAGAGGCATAAACCCTGGGTGGCATCTTGACCGAGTGGAGATTAGAAGGCTTTTAAGGAAAGGAAAGGGATCTGAGACTACCATATTCCCATGTGAGAGATGGTTGGCAAAGTCTGAAGATGATGGCGAGACAGTGAGAGAGCTGGTGCCCTCAGACATCATCATAGAGAGGCTTCTAAGAGATGGCACTCTGAAATGCACTGAGACTGAAGTGGAAGATGCATTGGAAACTCACACATATGAAGTGTCTGTAAGAACAGGTGATATGTATGGAGCAGGTACAGATGCCAATGTGTTCCTGACCATCTATGGAGAACTTGGAGACACAGGAGAACGCAAACTCAGCAAATCAGAGACCAACAAAAATAAGTTTAAGAGAGGAGCAGTTGATAAATTCAGCATTGAGGCTGTGGACCTCGGGCAAGTTTTTAAGATCAAAATACGGCATGACAATTCTATGATAGGAGCGGACTGGTACCTAGAACAGGTGGAAATTGTGGATACAGACACAGAGGAAACCTCCATGTTCTTATGTGAAAGGTGGCtctcaaaaaagaaagaagataaaAGGATTGAGAGAACATTTTATGTCAAGGGATATGAAGGTGAAAGGAATCCCCAGAATTCTAAGCCAAGCCTAGACAGCAACatgaacaagaagaaaaagaagaaaaaatcagCAGCTGTAGAGGAGGGTGCTGTTATCCCATATCACTTTACGGTGTCGACAGGATCGGACCGTGATGCTAGTACTACCAGTCGGGTCTTTGTGATCATCATAGGAGCAAATGATCTTGAAACAGACAGACTCTGGCTCGACCTTCCTGAAGGAAAGAAATGCTTTGCTGCTGAAACTATGGAACACTTTGAATGTTATGGGTTGGATGTAGGAGAAATCAAAAGAGTCGAGtTAGGCCATAATGGTGCTACTCCAGAAAGCTGCTGGCTGGTGGAGGAGCTGGCCGTGGCAGTGCCTACCAAAGGCATCAAGTATATATTCCAGTGTAACTGCTGGCTTGCCAAGGATAGAGGGGATGGTCTCACATCAAGAATGTTCAATATACTTGATGCCATCACTATTAATATAATTCAAAAgGTTATCTATGAGATTACAGTTGTTACAGGAGACGTCCAGTATGCAGGGACAGACACCAACATATTTATAACTGTATTTGGGGCCAATGGGAGCACAGAAGAGATTTTGTTACCAAAGAATGAGGACAGGtttgagagagatcagaaggACACTTTTAATTTGGAGATAGATGACATTGCTCCACTTAAAAAGCTGAGGGTTCGCATCGATGGGACAGGATGCCGACCTGATTGGTTCCTTGACAAGATTATCATGCGAAACCCAATCACTGAGGAAGTGTCGGTTTTCACCTATGAGGACTGGCTATCCAAAACGAAAGGGCCAAAGAGGACAAAGGTCTGTGAGCTCCCTGCAGTGGTTGACGATGAGGAGATGGTGGAGAAAACCACCTATATCATTCAGGTTAAAACCAGTGACATTGCTGGTGCAGGCACAGATGCTAACGTGTTCATGATTGTGTTTGGGGAGAATGGGGACACAGGCACTCTAGCACTGAAAGAATGCAGCAACAGGAACAAATTTGAGCGCAATCAGGTGGATGTGTTCCGCTTTTCAGACATCCTCAGCCTGGGAGAGCTTTCCAAGATCCGAGTATGGCATGATAATAaggGTGTTGCTCCTGGTTGGCACTTAGAAAACATTGATGTAAAAGATGAGTTCATGAGCCAAACCTTTCGATTCCCTTGTGACCGCTGGCTGGCCAAAAGTGAGGATGATGGCCAGATTATTCGGGAACTGGCCTGTGCCAACAATGATATCCTGGACCTCAGTGACAAGACCAAATATGATATTGACATTACTACAGCCAACTATGAAGGTGCAGGGACAAAGGAGAATGTGTGCATAGTGCTTGAGGGGAAAAGAGCACGTTCGAAGGAGTTTATGATGGAAAATTCTTCAAAGAAAAGGAGATTTGTGTGGGGTACAACTGACTCATTTGAGTTTTCCTCCAAACATCTGGGAGATATTGTTAGCATCTCTTTGGGCCATAtaacaaaagataaaaaagtGAAGAATGAGGCTTACTGGCATGTTGAGGAGGTGGTGGTGACAGAACAAGAGCTGGGGAACAAGTACTTTTTCCATTGTGATGCCCAGATCCTTCTCAGTACGAAGAAAGGCGAGTTTGTGACATTTGAGTGCATTAAGTGCGTTGAGAGCTTCGCCAGCAAAGTGCGCAGCTTGGTTCCCGTCAAATATGAGATTATTGTCATCACAGGTGATGTGAAGGGAGCTGGGACTGATGCCAATGTCTTCATTACCATCTATGGTGTGAACGGCGACTCAGGGAAGCATCCACTGAAGCAGAAATTTAGGAACCTGTTTGAGAGGGGCCGTACTGACCGCTTCATGTTGGAGATGCTGGACTTGGGTGATCTCCTGAGAGTAAAAGTGGAGCATGACAACACTGGCCAAGCACCAGGCTGGTACCTGGAGTGTGTAGAGATTACAAACACTGCCAACTGGGTTACCACAATCTTCGTTTGTGGAAAGTGGATGGATAAAACAAAAGCAGATGGAGAAATCGAAAGAGTTTTGTTCCCCAGATACTGACACTCGTACCTTTTTTATGAACTggttttccattttaatttacatttttcattagtttattaatttttagaaatgaatttttaaaattttaaaactatttagtACTTTTTGAATAGCAATTTGAGCCAACATTTTATCTAAATGAAATAATGGATTCGATGTAAAAGAGCCAtcttaaagcattttttaaattttatttgaaaaacacatacaa

Function

symbol description
loxhd1b Predicted to enable catalase activity and heme binding activity. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; autosomal recessive nonsyndromic deafness 77; and orofacial cleft. Orthologous to human LOXHD1 (lipoxygenase homology PLAT domains 1).

NR:

description
PREDICTED: lipoxygenase homology domain-containing protein 1-like

GO: NA

KEGG:

id description
K24822 LOXHD1; lipoxygenase homology domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916314.2 False 2387 mRNA 0.43 12 16080125 16085108
XM_034306612.1 True 4839 mRNA 0.44 28 16072774 16085108

Neighbor

gene id symbol gene type direction distance location
ptger4a LOC108265018 coding upstream 13111 16054920 ~ 16059663 (+)
mrps27 mrps27 coding upstream 30627 16034502 ~ 16042147 (+)
znf366 znf366,LOC108430334,LOC107573350 coding upstream 43415 16024372 ~ 16029359 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding upstream 61875 16005482 ~ 16010899 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding upstream 69463 15996325 ~ 16003311 (+)
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding downstream 25264 16110372 ~ 16124577 (+)
dpysl2a dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023 coding downstream 43078 16128186 ~ 16158486 (+)
tmem230b tmem230,ct030,LOC101077900,LOC106579885,LOC105894893,LOC103023473 coding downstream 139506 16224614 ~ 16231225 (+)
igsf9b LOC108265804,LOC108430342 coding downstream 146993 16232101 ~ 16270087 (+)
ciao1 ciao1,LOC107714582,LOC107671031 coding downstream 209352 16294460 ~ 16301671 (+)
G133635 NA non-coding upstream 29735 16042840 ~ 16043039 (+)
G133617 NA non-coding upstream 100665 15971860 ~ 15972109 (+)
LOC117597798 NA non-coding upstream 431816 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 466435 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 646402 15425189 ~ 15426372 (+)
G133721 NA non-coding downstream 79578 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 86077 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 87182 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 245472 16330580 ~ 16362249 (+)
G133890 NA non-coding downstream 354158 16439266 ~ 16440523 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 53956 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 687950 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1089890 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1092870 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1749324 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 317640 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 495149 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 631025 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 774868 16859976 ~ 16868768 (+)
G134341 NA other downstream 1211003 17296111 ~ 17296883 (+)

Expression


Co-expression Network