dpysl2a (dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023)


Basic Information

Item Value
gene id dpysl2a
gene name dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16128186 ~ 16158486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921706.2
atgcgcagtggcATTCGCAGCGCAAATCTCCCCTTATCGGCGATAGCCAGAAGTGTCTTGGCGTAACGCCGGAACGTCAGGGAAAAAGCTGTCATTTAAAACGGAGGGAATATTTCTCTGTTACCAGTTTCGCCACCTGTGAATCACAGCTGTTATAACATTTTTAGCGCATTCTTCATTTTGCTAGCCACCAGACAGCGGGGGTCGTCCAATCGCAGGGCGTCGACTTGAGCATCAGTCTAGAGGTTTGTGGTTGAGGAGCGGCGAACAATACACAGTCCGCAATCACCGTCGACATGTCCGGATACCAGGGCAAAAAGAACATCCCTCGCATCACTAGTGATCGTCTCCTTATTAAAGGGGCGAAGATTGTGAACGATGATCAGTCCTTCCATTCTGACATCTATATGGAGGATGGCGTTATTAAGCAAATTGGGGAGAATCTCATTGTTCCCGGTGGGGTGAAGACCATTGAAGCCCATGGCAGGATGCTGATCCCTGGTGGCATTGATGTGCACACCCGCTTCCAGATGCCCGACCGGGGCATGACAGCTGCAGACGATTTCTACCAGGGCACTCGTGCTGCTCTTGCTGGGGGCACCACTATGATCAttgaCCATGTGGTGCCAGAGCCAGGCGTTAGCCTTATTGCTGCATTTAACCAGTGGAGGGAATGGGCAGACAGCAAGTCATGCTGTGATTACTCGCTCCATGTGGACCTCACTGAGTGGCACAAGGGCATGCAGGAGGAGTTGGAGACCCTGGTGAAGGAGCATGGTGTCAACTCTTTCCTGGTGTATTTGGCATATAAGGATCTTTTCCAGATTAATGATTCCCAGATGTATGAGGTGTTCAGTGTAATCAGAGACCTGGGAGCCATCGCCCAAGTGCATGCTGAGAACGGGGATATCATTGCTGAGGAGCAGAAAAGAATCCTTCAGTTAGGCATCACTGGCCCAGAGGGTCATGTTCTCAGTCGTCCAGAAGAGGTGGAAGCTGAGGCGGTCAGTCGTGCAGTAACAGTGGCCAATCAAACCAATTGCCCTCTGTACATCACCAAGGTGATGAGCAAGAGTGCTGCTGATGTCATTGCTCAGGCCAGAAAAAAAGGTACAGTAGTGTATGGGGAACCTATCTCTGCTAGTCTGGGCACTGATGGCACTCACTACTGGAGCAAGAACTGGGCCAAGGCTGCTGCCTACGTGACATCTCCACCTTTGAGCCCGGATCCCACCACCCCCGACTATCTCAACTCTCTGCTCTCCTGTGGTGATCTGCAGGTAACTGGCAGTGCTCACTGTACATTTAACACCTCTCAGCGAGCTGTGGGCAAAGACAACTTCACCCTCATCCCAGAGGGTACCAATGGCACTGAGGAGAGGATGTCCATCATCTGGGACAAGTGTGTGGTGACTGGTAAGATGGATGAGAATCAGTTTGTGGCTGTGACCAGCACCAATGCGGCCAAGATTTTTAACCTGTACCCACGTAAGGGCCGTATCGCTGTGGGCTCTGATGCTGACTTGGTGCTATGGGACCCTGATGTCACTAAGATCATCTCTGCCAAGAGCCACAACCTGGCAGTTGAATATAATATCTTCGAGGGTGTGGAGGTGCGTGGTGCTCCCTTAGTGGTGATCAGTCAGGGTAAGATTGTTCTGGAGGATGGAAACCTCCACACTACTGAGGGATCAGGACGTTACATAAACCGCAAAACCTTCCCTGACTATGTTTACAAGAGGATAAAGGCTCGCAGTAGGCTTGCTGAGCTGCGTGGTGTCCCACGTGGCCTTTACGATGGTCCAGTGTGTGAGGTCACTGTGACACCTAAAGTAATGACCCCTGCGACCTCTAACAAGACTTCTCCAACCAAACCCGCCCCTCAACCCATTCGCAATCTGCATCAGTCTGGATTCAGTCTGTCTGGAGCTCAAATTGATGACAATGTTCCTCGCCGCACCACTCAGCGCATCGTAGCGCCCCCTGGTGGCAGGGCAAACATCACCAGCCTGGGTTAAAGAACACACTTCCCCAGTCCTGAAAGAATGGGGCCGGCAGGGACCCAAGGGCCCTTGCTTTGGTTATCACTCCTACCAATGAGACCTCTACCAGGCCCCTACAGTACAATATGACAACATCCTCAAATTTATCATCAGTAATTTACTCAAAAAGAAACACGGTCAAGGCGTTATTGTGTATTTTCCAACATTATCTTTAAActactatttgtttttttccttgtagGAAGAGTAATGTGAATCTAAGCTAAAcctgtattattttattgttacacGTAAATCATGTAAATGACAGAGAAAAATTCATCCTGTTCAGAATTATCCTTCAGTcactttcatttattcagcAAATATTGTTAACACATTGGTCTAgtgtttgggatatttttaagGAACTTGGGTAGTTAGGTGTGTTGTTCTGGTGTctttcatttcaaattggtgggtttttttgtgcTGCCAGCATAATTTACTTtggtattattttaaaaacagtaatgacatttatatttttggtCTTCAAGTTCATTATATCAGATTTAGGGTTAGACTATTTATGTCTTCTGAatactacacacatacagaaaagAACTATGCTTGgctgaataaaagaaaagaatccAGATCCCTTTGTatcactttttccccttttaaaTTTCCCCAGTCCCCCATCTCTAGTTGTCCATGAGTAAGGTATCCTGGCAACAGTCTTTAACCCTTGAAATAACGGTTTATTGGTTTCGACAGGCATGTTATGGTGCTATTTAATTGGCATTGCTGATGTGGAACGGGCCAGTCTGCTTGTCCAGCTATGACAGAGCCTGTAACACTTATCCACCAGTAGTCACCAAGCTTCCTCTCTCCTTTACATCCCTTTATCCTTCTGATCTTCACTGTATGgtcattttgtggtttcttagtGACCATAGTGATTGCATATCATCTGGCATGTGTAGAATTGATCCTGTGGAGATATGGTGTTGGTTCAGTTTACccagtaaaaatgtttttacttttaattctgctgttttctttaatgtCACATTCACTTGCCTGCTTGTATATTAGATGGTTCTTGACTGTCTGTGAGTATTGTTATAAAGACCTAAGaatttctcatgaaaaaaaattgtacagaGTTTATCTCTCTGCTTCATTCCATCCATTGTAGGAAATGTTACTGGTTAAAGGCTAACTAATCCACTAATGGTACCGAGCAGAGTCCTTTATCTGCAGTAGCATTAAAAGCTCATAGAGCTCATAAGTCTAAACAGACCTACATCAGTACTTAATATCCCTACACTAACACTTTTGTGCAGCATTACAACTCTTATAGTGATGGGAATGTAGAACTGTGGTGAAAGATGAGCAAGTTGGGTGCCAGTACCATACAAGTACAATGCTTCTATGATTTGCCCTTGAAGCATCTAAATTTACACTAGTTGTGATGTGTGGATTGCAGAGGAGAAAGAACATTTTAGTgtctttcttattttaatttttatgacTTGTTGCCCTTTGTCATGCATTGTTGAAGGTAAAAAAATTGTTGACTGTGTATGTTTTATAGGCTTCTGGGATCTGCAAAAGTTTTCTTCCTCACTCAGAAAGCTTTGCATTCCATATGTgtttaatgaaatgattttaagtattaaaaatgaaacaaaatttcaaaattt
>XM_034306811.1
TGTATATGAGCTATCAGCCTTACAGCTTGTGACTATGAGTGATCGTCTCCTTATTAAAGGGGCGAAGATTGTGAACGATGATCAGTCCTTCCATTCTGACATCTATATGGAGGATGGCGTTATTAAGCAAATTGGGGAGAATCTCATTGTTCCCGGTGGGGTGAAGACCATTGAAGCCCATGGCAGGATGCTGATCCCTGGTGGCATTGATGTGCACACCCGCTTCCAGATGCCCGACCGGGGCATGACAGCTGCAGACGATTTCTACCAGGGCACTCGTGCTGCTCTTGCTGGGGGCACCACTATGATCAttgaCCATGTGGTGCCAGAGCCAGGCGTTAGCCTTATTGCTGCATTTAACCAGTGGAGGGAATGGGCAGACAGCAAGTCATGCTGTGATTACTCGCTCCATGTGGACCTCACTGAGTGGCACAAGGGCATGCAGGAGGAGTTGGAGACCCTGGTGAAGGAGCATGGTGTCAACTCTTTCCTGGTGTATTTGGCATATAAGGATCTTTTCCAGATTAATGATTCCCAGATGTATGAGGTGTTCAGTGTAATCAGAGACCTGGGAGCCATCGCCCAAGTGCATGCTGAGAACGGGGATATCATTGCTGAGGAGCAGAAAAGAATCCTTCAGTTAGGCATCACTGGCCCAGAGGGTCATGTTCTCAGTCGTCCAGAAGAGGTGGAAGCTGAGGCGGTCAGTCGTGCAGTAACAGTGGCCAATCAAACCAATTGCCCTCTGTACATCACCAAGGTGATGAGCAAGAGTGCTGCTGATGTCATTGCTCAGGCCAGAAAAAAAGGTACAGTAGTGTATGGGGAACCTATCTCTGCTAGTCTGGGCACTGATGGCACTCACTACTGGAGCAAGAACTGGGCCAAGGCTGCTGCCTACGTGACATCTCCACCTTTGAGCCCGGATCCCACCACCCCCGACTATCTCAACTCTCTGCTCTCCTGTGGTGATCTGCAGGTAACTGGCAGTGCTCACTGTACATTTAACACCTCTCAGCGAGCTGTGGGCAAAGACAACTTCACCCTCATCCCAGAGGGTACCAATGGCACTGAGGAGAGGATGTCCATCATCTGGGACAAGTGTGTGGTGACTGGTAAGATGGATGAGAATCAGTTTGTGGCTGTGACCAGCACCAATGCGGCCAAGATTTTTAACCTGTACCCACGTAAGGGCCGTATCGCTGTGGGCTCTGATGCTGACTTGGTGCTATGGGACCCTGATGTCACTAAGATCATCTCTGCCAAGAGCCACAACCTGGCAGTTGAATATAATATCTTCGAGGGTGTGGAGGTGCGTGGTGCTCCCTTAGTGGTGATCAGTCAGGGTAAGATTGTTCTGGAGGATGGAAACCTCCACACTACTGAGGGATCAGGACGTTACATAAACCGCAAAACCTTCCCTGACTATGTTTACAAGAGGATAAAGGCTCGCAGTAGGCTTGCTGAGCTGCGTGGTGTCCCACGTGGCCTTTACGATGGTCCAGTGTGTGAGGTCACTGTGACACCTAAAGTAATGACCCCTGCGACCTCTAACAAGACTTCTCCAACCAAACCCGCCCCTCAACCCATTCGCAATCTGCATCAGTCTGGATTCAGTCTGTCTGGAGCTCAAATTGATGACAATGTTCCTCGCCGCACCACTCAGCGCATCGTAGCGCCCCCTGGTGGCAGGGCAAACATCACCAGCCTGGGTTAAAGAACACACTTCCCCAGTCCTGAAAGAATGGGGCCGGCAGGGACCCAAGGGCCCTTGCTTTGGTTATCACTCCTACCAATGAGACCTCTACCAGGCCCCTACAGTACAATATGACAACATCCTCAAATTTATCATCAGTAATTTACTCAAAAAGAAACACGGTCAAGGCGTTATTGTGTATTTTCCAACATTATCTTTAAActactatttgtttttttccttgtagGAAGAGTAATGTGAATCTAAGCTAAAcctgtattattttattgttacacGTAAATCATGTAAATGACAGAGAAAAATTCATCCTGTTCAGAATTATCCTTCAGTcactttcatttattcagcAAATATTGTTAACACATTGGTCTAgtgtttgggatatttttaagGAACTTGGGTAGTTAGGTGTGTTGTTCTGGTGTctttcatttcaaattggtgggtttttttgtgcTGCCAGCATAATTTACTTtggtattattttaaaaacagtaatgacatttatatttttggtCTTCAAGTTCATTATATCAGATTTAGGGTTAGACTATTTATGTCTTCTGAatactacacacatacagaaaagAACTATGCTTGgctgaataaaagaaaagaatccAGATCCCTTTGTatcactttttccccttttaaaTTTCCCCAGTCCCCCATCTCTAGTTGTCCATGAGTAAGGTATCCTGGCAACAGTCTTTAACCCTTGAAATAACGGTTTATTGGTTTCGACAGGCATGTTATGGTGCTATTTAATTGGCATTGCTGATGTGGAACGGGCCAGTCTGCTTGTCCAGCTATGACAGAGCCTGTAACACTTATCCACCAGTAGTCACCAAGCTTCCTCTCTCCTTTACATCCCTTTATCCTTCTGATCTTCACTGTATGgtcattttgtggtttcttagtGACCATAGTGATTGCATATCATCTGGCATGTGTAGAATTGATCCTGTGGAGATATGGTGTTGGTTCAGTTTACccagtaaaaatgtttttacttttaattctgctgttttctttaatgtCACATTCACTTGCCTGCTTGTATATTAGATGGTTCTTGACTGTCTGTGAGTATTGTTATAAAGACCTAAGaatttctcatgaaaaaaaattgtacagaGTTTATCTCTCTGCTTCATTCCATCCATTGTAGGAAATGTTACTGGTTAAAGGCTAACTAATCCACTAATGGTACCGAGCAGAGTCCTTTATCTGCAGTAGCATTAAAAGCTCATAGAGCTCATAAGTCTAAACAGACCTACATCAGTACTTAATATCCCTACACTAACACTTTTGTGCAGCATTACAACTCTTATAGTGATGGGAATGTAGAACTGTGGTGAAAGATGAGCAAGTTGGGTGCCAGTACCATACAAGTACAATGCTTCTATGATTTGCCCTTGAAGCATCTAAATTTACACTAGTTGTGATGTGTGGATTGCAGAGGAGAAAGAACATTTTAGTgtctttcttattttaatttttatgacTTGTTGCCCTTTGTCATGCATTGTTGAAGGTAAAAAAATTGTTGACTGTGTATGTTTTATAGGCTTCTGGGATCTGCAAAAGTTTTCTTCCTCACTCAGAAAGCTTTGCATTCCATATGTgtttaatgaaatgattttaagtattaaaaatgaaacaaaatttcaaaattt

Function

symbol description
dpysl2b Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and microtubule binding activity. Acts upstream of or within axon regeneration and axonogenesis. Located in cytosol. Is expressed in nervous system; neural plate; otic vesicle; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL2 (dihydropyrimidinase like 2).
dpysl2a Orthologous to human DPYSL2 (dihydropyrimidinase like 2).

NR:

description
dihydropyrimidinase-related protein 2-like

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K07528 DPYSL2, CRMP2; dihydropyrimidinase-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921706.2 True 3697 mRNA 0.45 14 16128186 16158486
XM_034306811.1 False 3396 mRNA 0.44 14 16137562 16158486

Neighbor

gene id symbol gene type direction distance location
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding upstream 3609 16110372 ~ 16124577 (+)
loxhd1a loxhd1b,LOC108265797,LOC108430301 coding upstream 43078 16072774 ~ 16085108 (+)
ptger4a LOC108265018 coding upstream 68523 16054920 ~ 16059663 (+)
mrps27 mrps27 coding upstream 86039 16034502 ~ 16042147 (+)
znf366 znf366,LOC108430334,LOC107573350 coding upstream 98827 16024372 ~ 16029359 (+)
tmem230b tmem230,ct030,LOC101077900,LOC106579885,LOC105894893,LOC103023473 coding downstream 66128 16224614 ~ 16231225 (+)
igsf9b LOC108265804,LOC108430342 coding downstream 73615 16232101 ~ 16270087 (+)
ciao1 ciao1,LOC107714582,LOC107671031 coding downstream 135974 16294460 ~ 16301671 (+)
cdc45 cdc45,LOC107670985,LOC107699634 coding downstream 147341 16305827 ~ 16315310 (+)
zgc:63587 LOC108430351,LOC108265487,LOC103046559,LOC105014311 coding downstream 170256 16328742 ~ 16353557 (+)
G133635 NA non-coding upstream 85147 16042840 ~ 16043039 (+)
G133617 NA non-coding upstream 156077 15971860 ~ 15972109 (+)
LOC117597798 NA non-coding upstream 487228 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 521847 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 701814 15425189 ~ 15426372 (+)
G133721 NA non-coding downstream 6200 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 12699 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 13804 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 172094 16330580 ~ 16362249 (+)
G133890 NA non-coding downstream 280780 16439266 ~ 16440523 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 109368 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 743362 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1145302 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1148282 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1804736 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 244262 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 421771 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 557647 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 701490 16859976 ~ 16868768 (+)
G134341 NA other downstream 1137625 17296111 ~ 17296883 (+)

Expression


Co-expression Network