slc25a27 (slc25a27,LOC107710953)


Basic Information

Item Value
gene id slc25a27
gene name slc25a27,LOC107710953
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20171393 ~ 20176121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925088.2
CGTTTACCTACTTGGCTGTAAAGCAGAGATCTAATGTTGTCAATTATGATAAACATTGTCAAACGCTGAGtcagatttacacacatacattacatatataaacacataattTTTTTGCGGTCGTACCTGGAGGCTGatatctgtttatttacatatatatttcttattctgaAACGGTGTACATATAAAACGGACTATCCAACGTCCTTGCTCTGTACCGCGCTGTGAcctgggaaatgtagtttaatATAGTTCATCATTACATTCAGACAATTGCATGTAAAAGGTCTTTGAACTACTGTCTTCCGGGTTTGAATCAAATTCTCTGTCCTCATGTGAGCCAAGTAAACACTGGAACAGTATTTGCAGCTGACACATGCAATGAGACCTGTGCAAGAAATTTCGCAGTGGCCCAAAGTATCAAAGTTCACTGTGTCTGCATGTGCTGCCAGTGTTGCAGAATTGGTCACATTTCCCCTTGATCTTACAAAAACAAGGCTTCAAATACAAGGCGAATATGCTCCTGGGAAACTCAGCAAGAGTGGAACCGCCAACACTGTGTACAGGGGAATGCTAAGCACAGCTGTAGGAATAGTGCGAGAAGAAGGACCACTAAAATTATGGCAAGGGGCAACACCTGCAATCTACAGACATATAGtttattcaGGGGGCAGGATGCTAGCGTACGAACAGCTCCGGGATTTTGTGTTGGGAAAATCGGAAGATGGCAGCTTTCCCCTTTGGAAGGCTGCATTTGGTGGCATGGTATCTGGTGCTCTGGGCCAATTTTTGGCCAGCCCCACTGATCTAGTTAAGGTACAGATGCAAATGGAAGGGAAAAGAAGGCTGGAAGGCAAACCACCAAGAGTTCATGGGGTTATTCATGCCTTTGTGAAGATTGCGAAGGAAGGAGGGATCCGGGGCCTCTGGGCTGGTTGGGTGCCCAATGTACAGAGAGCTGCTTTGGTCAATCTAGGAGATCTCACAACATATGACAGCGTGAAGCACTTTCTACTAAGGAATACCTCTATAGGGGACAACTGTCTTTGTCATGGATTGGCAAGCACTTGTTCTGGTCTAGTCGCAGCTATGATGGGAACACCGGCTGATGTGGTTAAGACGAGAATAATGAACCAACCTCGGGACTCAAATGGAAGGGGTCTCCTGTACAAGTCATCCATAGACTGTCTGGTTCAGTCTGTTAGAGCAGAGGGATTGCTAACACTTTATAAAGGCTTCGTACCAACCTGGTTAAGAATGGCTCCCTGGTCAATGACATTTTGGCTAACCTTTGAGCAAATCAGACGTGCTGTGGGCATCAGTTCATTCTGAACATATGAATCAAAGgagcaataaaaataaactgttgttaaggaaaagagagagtttTTTCCTTCAGTGCATTAATgttgctacctcacagctccagggtccccagctTGATCCACAgcttgggtttttttctgtatggagattgtgtgcatgttctccccatgttcctgtgggtttcttccaggctCTCTGGTTCCCTCCCACCTGCCAAAAGCATGCCATTAAGTGGATTTGCTTagttaaattgcccctaggtctgaatgcatgtgtgcatggtgtcgaGTGTTCTTGCGATCCACAGTCCTGaccaaaaatctgagaaaatcTGACCTGCAGTTATTAGCCTAcaattaaaatgttcttttacaGGCAAAATCCACTGTGAACCAAGAGGAATATAAAGGCTCATGTCACATCTGCCAAAAACACCTTAACGACCAGCAAGCCTTGTAGGATAATGTTCTGTGGACTGATGAGGTGAAAGTGGAACATTTTGGTAGACGTCGGTCCTATTGCATCAGGCATAAAGCTAACACTGGCATAAAGCTTCCAcaataagaacatcataccAACAGTCaaatatggtggtggtagtgtgatggCGTGGGGGTGCTTTGCTGTTTCGGGGTCTGAATAATCTATCTGCACCTTATTCAAACATGTCTTACATGCCAAACATGTTTTAAcctcattaattcatttaataaaatgaatcattaattccttcattcattttcactgactgctttatcctgatcagggctATGGTGCATTGtgagcctatcctgggagcaAGCCGAAATAAACCATCAGTCACATGTAGGGGCAACTTAGAAAAGTCAGTtcttgggaggtggaaggagaCCAACAAAGATACAAAGAGAACATGGAAAATATTCACAGTAAATAGAGTTCAGGATCACACCCTGGACCCTGGAGCTTTAAGGGAACTAATACTACCTGCTGTACCACCATGATGCGATGTCTAATACAtcaact

Function

symbol description
slc25a27 Predicted to be involved in response to cold. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; brain; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human SLC25A27 (solute carrier family 25 member 27).

NR:

description
mitochondrial uncoupling protein 4

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15112 SLC25A27, UCP4; solute carrier family 25 (mitochondrial uncoupling protein), member 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925088.2 True 2331 mRNA 0.44 10 20171393 20176121

Neighbor

gene id symbol gene type direction distance location
LOC113533330 dcaf1,LOC107697997,LOC107698428,LOC107706036 coding downstream 204510 19946474 ~ 19966883 (-)
si:dkey-11f4.7 LOC108265228,LOC108434403 coding downstream 374426 19755386 ~ 19796967 (-)
actr5 actr5 coding downstream 456005 19706654 ~ 19715388 (-)
kif5aa kif5aa,LOC108265229,LOC108411947,LOC107753414,LOC107700970,LOC107550341 coding downstream 503592 19640614 ~ 19667801 (-)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding downstream 543534 19610527 ~ 19627859 (-)
cacna2d3a cacna2d3,LOC103362818 coding upstream 332605 20508726 ~ 20704564 (-)
LOC113533248 NA coding upstream 581595 20757716 ~ 20767480 (-)
cacna1db cacna1d coding upstream 609813 20785934 ~ 20902575 (-)
cfap74 cfap74 coding upstream 799163 20975284 ~ 21028944 (-)
LOC113533345 LOC108265574,LOC108412055 coding upstream 1014467 21190588 ~ 21192119 (-)
G135644 LOC107737118 non-coding downstream 156590 20014574 ~ 20014803 (-)
G135642 NA non-coding downstream 158622 20012565 ~ 20012771 (-)
G135624 NA non-coding downstream 171150 19949645 ~ 20000243 (-)
G135544 NA non-coding downstream 248940 19825858 ~ 19922453 (-)
G135467 NA non-coding downstream 454432 19716504 ~ 19716961 (-)
G135832 NA non-coding upstream 9134 20185255 ~ 20186401 (-)
G135854 NA non-coding upstream 63657 20239778 ~ 20307730 (-)
G136142 chdh non-coding upstream 606266 20782387 ~ 20792857 (-)
G136190 NA non-coding upstream 715834 20891955 ~ 20892408 (-)
G136198 NA non-coding upstream 731947 20908068 ~ 20910023 (-)
trnat-cgu_2 NA other downstream 130442 20040880 ~ 20040951 (-)
G135737 NA other downstream 130705 20040297 ~ 20040688 (-)
LOC113533329 LOC108265714 other downstream 166003 19973564 ~ 20005390 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other downstream 472863 19696398 ~ 19698530 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other downstream 1909175 18253585 ~ 18262218 (-)
LOC117597783 NA other upstream 95468 20271589 ~ 20273976 (-)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC100703896,LOC104919476,LOC103044197 other upstream 760998 20937119 ~ 20965492 (-)
G136569 NA other upstream 1180607 21356728 ~ 21361844 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 2235130 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 2775819 22951940 ~ 22959698 (-)

Expression


Co-expression Network