LOC113533248


Basic Information

Item Value
gene id LOC113533248
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20757716 ~ 20767480 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925242.2
gtatagcaaaaacaaaagaaatggccttgctgttccaatactttcggagaaGACTGTATATGAATAGGCTatttaatctggatttaaatagtatattttaaacaatatacAGAGTCTGAGTTAGAGGGAGCTATTTTAGTGGGCTTGACCAAGCATAAAAGAGGCGGAGcggaaaaaaacagtttatctAGCTGGCTAGATCTCTCAGGTAGTGTCAGAATTCTTTTCATGTGGCTCTTTGTAGACTCTCATGTTCTTTCAATGGAGTTGTTACGCAGCATCAGAAGTGTATTTTGCCTCTGCCTGCTTCATCTCGCAGTAACTGACACCACTGCTCTCAATATAGTTGTGACATGTACCAAGACAAATGATTTGAACCCTGACACATGGTGGACACCTCCCAAATCCAATCCTTCTCCGCTACATGATCTTAAAGTTCAATTTACTTCTCTGAATGGTGCTCCAGCTTCTCTTGCTCTCAACATAACATGGGCTATAAACATTGACAGTAGTATTCACAGTATTAACAGCACATGGATAGAAGTTGACATGATACAGATACAGCTGAGATACAGATGTGAATATCAACCTCCATTTACTTCAAAACAGGTCCACACTGGTGATTTAGAGCAGCTTTGGTTCAGTTTTACAACCACAGATGTCAATATTGAACCCAGCGACTCTTACCAGGTAGATGTCTATAATCTTCCCCCAGCACCACCTAATGTACGACACCAATACTCAAAGCAAGCAGAGATAGAAGCACCTGGATGTGATGATGAACGGATGAGGGATCATCCAACATGTTTAAAGGAGAAGCAGGACCTTGTTACCCCAAAAAATGGAATGAGGCAATTACATTGTGAGCACTGGGACATTTCTATAGTCCGGATAAAGGATGAAATACAAGTGAGTTTTGACTCTCACTTGAACACAGAGAAGTACGAGATCAGACTGCGAAGAGGAACGCATATACTAAACTTTACTGAAGTGATGGTGAGAGGAGAAATTGAGACGCTTACAGCAACTCTGAAGTATTCCGGACCATGTAAAAATCTTACACTATGGATAACACCATTTTTTGAGCATTGTGGAGTTACATGCAAATCAGTTTGCTGCAATATAGACTGTCAAGTCCCATCTACAGCTGCACCAGCAGAAGAACCAAAGGAATATGAAACGTCTGTCCTGCTCATCAGCACTGGGTGTGCAGTAGccattattttgttgtttatctGCCAATTCTGGAGACTGCGGATGAGGTCTGGCTATTCCAGACGTGGACTAGACTCTGCAGGGTCAGTGGGAGTGCTGGTGGTGTATCCTGCAGTGGACAGTGTGTTCCAGAATGCTGTCATGGCCATAGCTGACTTTTTGCAAAGTCACAGAGAGCTGAATGTAGTCATTGACTTGTGGCAGAGAGGGAGTTTGGCGGAACAGGGCCCGCTCCGCTGGCTTAACTCACAAGTGGGTTGTGCTGAGAAAGTTCTCATTGTCTTGCCACCTCAAAACAATGAACTCAACACTGACACAGCCTGCTTAAAACTCAACATGGCATCTGTCGTAACTGATTACACCGTCCCAGCGTCTGCCTGCGAACTTTTCTCATTGGCACTAAACCTGGTTGCTAGCTGTGCCCATGATCCACAGCAGCACCATAAGTTCTTGGTGGTGCACTTGGACCATGGTGGACACAGAAGTACAATGCCAGTGGAGCTCAGAGGCTGCAAGGCCCTTATTCTGCCCAGAGATCTGGAGAAACTCCATCAACTGTCCTCCAGGCAAGGAGTAACAATCTCAAGCTGCAGGTCTGAGTCATACCGCTGTAAAGAAACCGCAAGGAGGGTCAGAGACGCTGTGCAGCAGttggacaaaagaaatggtttgTCTCACTAGAGTGGAAAGCAAGCCTCTCTGGTGTTCAGACCTTAGGCTGTGATAAAGGCCAGTTTGACTGGGTTTCCTTTCAAATTCTTTTATTGCTTTTCCctgaaggcaaaaaaaacatttaagaaaaTTGTTGAAAATATTTTCCACAATTTGaaataccagaaaaaaaatagctgcatgtgactaaacagaaaaaaacaccttatcttgaaatatgaaatattttatacttaAAGTGCTGGATTCTatattctgattctgatcatctgtggttttatttatttccactgtgtcatatttttatttcatactgtCACATACtttatttcaaatgattttAGTTCTACCATCTTTTTTCAGCTTGGGCCAACAGTTGACAGAACTTAGTATCTACAGATCAGAGTTGTGTACCTTATAACAAGCTATATGATAATCCTGACTTTGATAAGCTAAAGAGTTTATGTTTGCTTAATCTGATTTCTCAGAGGCTGACAGTTTGCAAAATATGATGATATGCATCTATGAAGGTCATATCCTTGTCACGAAAAA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925242.2 True 2439 mRNA 0.42 13 20757716 20767480

Neighbor

gene id symbol gene type direction distance location
cacna2d3a cacna2d3,LOC103362818 coding downstream 53152 20508726 ~ 20704564 (-)
slc25a27 slc25a27,LOC107710953 coding downstream 581595 20171393 ~ 20176121 (-)
LOC113533330 dcaf1,LOC107697997,LOC107698428,LOC107706036 coding downstream 790833 19946474 ~ 19966883 (-)
si:dkey-11f4.7 LOC108265228,LOC108434403 coding downstream 960749 19755386 ~ 19796967 (-)
actr5 actr5 coding downstream 1042328 19706654 ~ 19715388 (-)
cacna1db cacna1d coding upstream 18454 20785934 ~ 20902575 (-)
cfap74 cfap74 coding upstream 207804 20975284 ~ 21028944 (-)
LOC113533345 LOC108265574,LOC108412055 coding upstream 423108 21190588 ~ 21192119 (-)
LOC113533153 LOC108265759,LOC107570339,LOC107708259 coding upstream 547670 21315150 ~ 21333205 (-)
LOC113533387 LOC108265387 coding upstream 638282 21405762 ~ 21416585 (-)
G135854 NA non-coding downstream 449986 20239778 ~ 20307730 (-)
G135832 NA non-coding downstream 571315 20185255 ~ 20186401 (-)
G135644 LOC107737118 non-coding downstream 742913 20014574 ~ 20014803 (-)
G135642 NA non-coding downstream 744945 20012565 ~ 20012771 (-)
G135624 NA non-coding downstream 757473 19949645 ~ 20000243 (-)
G136142 chdh non-coding upstream 14907 20782387 ~ 20792857 (-)
G136190 NA non-coding upstream 124475 20891955 ~ 20892408 (-)
G136198 NA non-coding upstream 140588 20908068 ~ 20910023 (-)
G136212 NA non-coding upstream 187802 20955282 ~ 20955845 (-)
LOC117597792 NA non-coding upstream 441716 21209196 ~ 21225505 (-)
LOC117597783 NA other downstream 483740 20271589 ~ 20273976 (-)
trnat-cgu_2 NA other downstream 716765 20040880 ~ 20040951 (-)
G135737 NA other downstream 717028 20040297 ~ 20040688 (-)
LOC113533329 LOC108265714 other downstream 752326 19973564 ~ 20005390 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other downstream 1059186 19696398 ~ 19698530 (-)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC100703896,LOC104919476,LOC103044197 other upstream 169639 20937119 ~ 20965492 (-)
G136569 NA other upstream 589248 21356728 ~ 21361844 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 1643771 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 2184460 22951940 ~ 22959698 (-)
iqsec2b iqsec2,LOC108265842,LOC107747221,LOC107702804,LOC107683900,LOC107550910,LOC107725888 other upstream 2979990 23747470 ~ 23801583 (-)

Expression


Co-expression Network