G136212


Basic Information

Item Value
gene id G136212
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20955282 ~ 20955845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU160849
TGCAACTTTCAGTACCTTGTGCAACTCTACCAAGCACCATTGCCTTTCGGTGGATTTAAAGCCTTGCCTGTGCACAGGGCGGTGGTGTTAACCACTGCATCTCTGAAAGAGGAAGTAGAAAGAATGTAGAAGGCAAAACTAAAGTTGTCCCAGTGCTGATGGTTACACACAAGCTTCGCACTTGTAAGAAGAGAAGCTCAAACCGATTCTAGGAATGACCATAATCTCAGTCCAGAAAAGCACAAGCACTGCACTGTGACCTCAAACTCCCAGGCCTCTTGAGTCTTCCATCATATTCTGGCAGCACAATATATTGGCACCTCCCTCctgtagatttaaaaaatcattttcaacatGTGTGAAATTCTTCATAGGGCTACTTGTGATCCGTGAATATTCAGAGatttaacaaatattataatAGCCTTATGTATCATGCATATTAGAatatttgtcACAATTGAAATAAATCATTAGTAttgataataaattaattatcaGAAAAGGTCACACAATTGTGTCATATTGTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160849 True 533 lncRNA 0.39 2 20955282 20955845

Neighbor

gene id symbol gene type direction distance location
cacna1db cacna1d coding downstream 52707 20785934 ~ 20902575 (-)
LOC113533248 NA coding downstream 187802 20757716 ~ 20767480 (-)
cacna2d3a cacna2d3,LOC103362818 coding downstream 250718 20508726 ~ 20704564 (-)
slc25a27 slc25a27,LOC107710953 coding downstream 779161 20171393 ~ 20176121 (-)
LOC113533330 dcaf1,LOC107697997,LOC107698428,LOC107706036 coding downstream 988399 19946474 ~ 19966883 (-)
cfap74 cfap74 coding upstream 19439 20975284 ~ 21028944 (-)
LOC113533345 LOC108265574,LOC108412055 coding upstream 234743 21190588 ~ 21192119 (-)
LOC113533153 LOC108265759,LOC107570339,LOC107708259 coding upstream 359305 21315150 ~ 21333205 (-)
LOC113533387 LOC108265387 coding upstream 449917 21405762 ~ 21416585 (-)
mmp23ba mmp23b,LOC106572002 coding upstream 502372 21458217 ~ 21474450 (-)
G136198 NA non-coding downstream 45259 20908068 ~ 20910023 (-)
G136190 NA non-coding downstream 62874 20891955 ~ 20892408 (-)
G136142 chdh non-coding downstream 162425 20782387 ~ 20792857 (-)
G135854 NA non-coding downstream 647552 20239778 ~ 20307730 (-)
G135832 NA non-coding downstream 768881 20185255 ~ 20186401 (-)
LOC117597792 NA non-coding upstream 253351 21209196 ~ 21225505 (-)
G136564 NA non-coding upstream 391232 21347077 ~ 21347279 (-)
G136567 NA non-coding upstream 394430 21350275 ~ 21350546 (-)
G136570 NA non-coding upstream 398453 21354298 ~ 21408210 (-)
G136612 NA non-coding upstream 612185 21568030 ~ 21616069 (-)
LOC117597783 NA other downstream 681306 20271589 ~ 20273976 (-)
trnat-cgu_2 NA other downstream 914331 20040880 ~ 20040951 (-)
G135737 NA other downstream 914594 20040297 ~ 20040688 (-)
LOC113533329 LOC108265714 other downstream 949892 19973564 ~ 20005390 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other downstream 1256752 19696398 ~ 19698530 (-)
G136569 NA other upstream 400883 21356728 ~ 21361844 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 1455406 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 1996095 22951940 ~ 22959698 (-)
iqsec2b iqsec2,LOC108265842,LOC107747221,LOC107702804,LOC107683900,LOC107550910,LOC107725888 other upstream 2791625 23747470 ~ 23801583 (-)
rab7b rab7a,zgc:100918,LOC103037223,LOC108426684,LOC107588983,LOC105902761,LOC107689338,LOC105890731,LOC107602073 other upstream 4716673 25672518 ~ 25682956 (-)

Expression


Co-expression Network