LOC113533387 (LOC108265387)


Basic Information

Item Value
gene id LOC113533387
gene name LOC108265387
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21405762 ~ 21416585 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925518.2
ATTTGGGTTACATTCCTACGAGGAAGTTTTTGGGGGTACTGATGAAAAAAACGAAGATATAACCGATTATGATCAAAggattttgtaaaaaatatatatttttgatagtAGTCTAGTTAGTGGACATCAGTCATGATGAGTGGTGAACCATCTGGGATAATGAGGATGCAGAGCGTGACTCCATTGCTGCCTCAGCGCCAGGAGAGCATGGAGGGTCCTTCTCCAAACCTGATGCCGAGGCACGGGGAGCTGATACCCACACCATGTGGACCAATAAAGAAGTGGTCGGAGCTCCAGTGCTTCGTGAAGGTCTACTTCTGCTTCACACTCATCTCCATGCTGGCGCTCCTCATCATCACTATAGTCAACATCGCGAGGGAGAGCTGGAAAAAGGGCGAAGATGAtgacctcagtgtctctctcATCCAGCTTGTGGGAATCCTGTTCTGCGTATACTACATTGCACGAGGCGTGCTGCAGGAGAACAGACAGGAGCTGATTAtctttggggtgtgtgtggttgtggtcATGGTGCGCTCTGTCGTCAACTTCAGCGtactcaaaaagaaagaaatactgCTAACGGTGCGGTTTGTGTGCATCatatgtgtgggtgtggtgCACGTGATCTGTGCCTCGCTGCTCATCCTAAGGTCCAACATGATGGCCTTCAGGGTAGGAGGAGCTTTGGAAAACATGCAGAAGCAGTACTGCCTGCTCAATCTCTGCTTCTCAATGGTGACTTTTGATCTTCAGGCGCAGCTGTGCTTGTGCATCCTGATCCTGACGTCAGGCCCTTCTGTGTCCAGGACTCATACCATTATTCTGGGAATTGGAGTGGTTTGGGCAATAATCACTGCAGTCGCTGGAGCCATTTCTGTTTTAAAAGAAGTCAAGCCACTGGTCTGGATTTTTATCCTCCTGAACTTACCTCAGCTGGCTTATTTCATTTACCTGCTATACACGATCGTTTCTGACTGGGGAGAGAGCGAAACATACATACTGGAGGCTGCCTCCATTACAGGctgtgtgatctcagtgaccatCAAATGTGTGCTGTTCTGGGGCTTGTTCCATCTGTACCGCAGCTTCGGCCAGGGTCTGCGGGAGAGAATGTTTGCTACAGATAAGCAGTAAGGATGATTATGAAGAGGACCAGCATGAGGACCAGCATGCACTGTTGCCAGTCAGCAGGGAGTACAATAATGCAACTTCATTTCACTGTTAAACATGCACTTACAGCTGACCAAAACTTCAGTTACGCAGGTTCATCAGCTGGAACAGATGTCTGTAAATCAATTTCAGACACAAAGTGAGAGCCAACACTGCCATTTAGCTTATTTCAAAGTCTTCAGAAATCTAGCTCTTGCTCTAAACTCCCTGAGGAACAAATGCCCTGAGGGTTTCACTTTTATCTGTAAAGGATAAGATTGATTTTACTGGACATGGAAATGCCAAATTAATCATGTAATGATTAGACATTCATTAGTTACATATTTATCTGTTACTAGTTTTTTATATGCTTTAAAATACTGGCTTTGCGAACATTTTAGCTATTTTAGATATTCACGTCATGTATTATTGTCAGTACTTCtgttaaaagttattttatgtTCAGATACATATCAGCAAAGTGTCCAATATTTACCAAACTGCATGTCTACTATTTTAGTAGCAGTGACAATGTCCATGCAAAATGTAACTCAGCCactccattttaaaatgttatatagtCTTAAGATATATATTGTTTCTAATTGTATAACATCAGTCTAAAATCTTCAACAAATAATAAGGCTGCGTCGTGTATGGGAATGGGAAGCACTTAAAATCACTATCAAAATGTCTTAATATCAGATAACAGGGTTCCTCCTGTTATCACGAATCAGAGACGTGTGTCAACTGTCATtcttttatattaataacaagGCGTTCAGATTTGTAGTTTCAGTTCCAGAGTTTTATGCCACTCAGTTCACTCTCAGAAGAAAGGTTACTAAACCGTCACTGGATTGGTAGAATGAtcttttatagttttaacatgtaTCTGTCACCTGGAAACGTGGatatatatagagtatataacTGGACTGTAATTACCTTTTAGAGCAAAGTGTGCAAAGGTACATTACATGCACATTTCTAGGAAAAGGATACCTAATAAAGgtccaccccagtgacaaggaaaggtaaaTTTACCCAAGGAAAGGTAAATttagtacagtttttttttgagtgttgtTAAAGCCTTTATACTTTTATAGTCATGATTGTTCAGTCACGTAAATGAATGATGAACTGCTACATATGGAATGAAtggcatgtaaaaaaaaaaaaaaaaacaatgga
>XM_026925519.2
GTCATCTCCCAGCCCCTCCCGCTActtaaaatgtttcttaaaaTGTTGCGATAGCGGCTAACATTGGAAAGTACATGACTAATATACAACTGAAAGCATCAGTGTCCTGGTTGGATTGGGCTCAATGGACGAGATTCGTCCATTGCTGCCTCAGCGCCAGGAGAGCATGGAGGGTCCTTCTCCAAACCTGATGCCGAGGCACGGGGAGCTGATACCCACACCATGTGGACCAATAAAGAAGTGGTCGGAGCTCCAGTGCTTCGTGAAGGTCTACTTCTGCTTCACACTCATCTCCATGCTGGCGCTCCTCATCATCACTATAGTCAACATCGCGAGGGAGAGCTGGAAAAAGGGCGAAGATGAtgacctcagtgtctctctcATCCAGCTTGTGGGAATCCTGTTCTGCGTATACTACATTGCACGAGGCGTGCTGCAGGAGAACAGACAGGAGCTGATTAtctttggggtgtgtgtggttgtggtcATGGTGCGCTCTGTCGTCAACTTCAGCGtactcaaaaagaaagaaatactgCTAACGGTGCGGTTTGTGTGCATCatatgtgtgggtgtggtgCACGTGATCTGTGCCTCGCTGCTCATCCTAAGGTCCAACATGATGGCCTTCAGGGTAGGAGGAGCTTTGGAAAACATGCAGAAGCAGTACTGCCTGCTCAATCTCTGCTTCTCAATGGTGACTTTTGATCTTCAGGCGCAGCTGTGCTTGTGCATCCTGATCCTGACGTCAGGCCCTTCTGTGTCCAGGACTCATACCATTATTCTGGGAATTGGAGTGGTTTGGGCAATAATCACTGCAGTCGCTGGAGCCATTTCTGTTTTAAAAGAAGTCAAGCCACTGGTCTGGATTTTTATCCTCCTGAACTTACCTCAGCTGGCTTATTTCATTTACCTGCTATACACGATCGTTTCTGACTGGGGAGAGAGCGAAACATACATACTGGAGGCTGCCTCCATTACAGGctgtgtgatctcagtgaccatCAAATGTGTGCTGTTCTGGGGCTTGTTCCATCTGTACCGCAGCTTCGGCCAGGGTCTGCGGGAGAGAATGTTTGCTACAGATAAGCAGTAAGGATGATTATGAAGAGGACCAGCATGAGGACCAGCATGCACTGTTGCCAGTCAGCAGGGAGTACAATAATGCAACTTCATTTCACTGTTAAACATGCACTTACAGCTGACCAAAACTTCAGTTACGCAGGTTCATCAGCTGGAACAGATGTCTGTAAATCAATTTCAGACACAAAGTGAGAGCCAACACTGCCATTTAGCTTATTTCAAAGTCTTCAGAAATCTAGCTCTTGCTCTAAACTCCCTGAGGAACAAATGCCCTGAGGGTTTCACTTTTATCTGTAAAGGATAAGATTGATTTTACTGGACATGGAAATGCCAAATTAATCATGTAATGATTAGACATTCATTAGTTACATATTTATCTGTTACTAGTTTTTTATATGCTTTAAAATACTGGCTTTGCGAACATTTTAGCTATTTTAGATATTCACGTCATGTATTATTGTCAGTACTTCtgttaaaagttattttatgtTCAGATACATATCAGCAAAGTGTCCAATATTTACCAAACTGCATGTCTACTATTTTAGTAGCAGTGACAATGTCCATGCAAAATGTAACTCAGCCactccattttaaaatgttatatagtCTTAAGATATATATTGTTTCTAATTGTATAACATCAGTCTAAAATCTTCAACAAATAATAAGGCTGCGTCGTGTATGGGAATGGGAAGCACTTAAAATCACTATCAAAATGTCTTAATATCAGATAACAGGGTTCCTCCTGTTATCACGAATCAGAGACGTGTGTCAACTGTCATtcttttatattaataacaagGCGTTCAGATTTGTAGTTTCAGTTCCAGAGTTTTATGCCACTCAGTTCACTCTCAGAAGAAAGGTTACTAAACCGTCACTGGATTGGTAGAATGAtcttttatagttttaacatgtaTCTGTCACCTGGAAACGTGGatatatatagagtatataacTGGACTGTAATTACCTTTTAGAGCAAAGTGTGCAAAGGTACATTACATGCACATTTCTAGGAAAAGGATACCTAATAAAGgtccaccccagtgacaaggaaaggtaaaTTTACCCAAGGAAAGGTAAATttagtacagtttttttttgagtgttgtTAAAGCCTTTATACTTTTATAGTCATGATTGTTCAGTCACGTAAATGAATGATGAACTGCTACATATGGAATGAAtggcatgtaaaaaaaaaaaaaaaaacaatgga

Function

NR:

description
PREDICTED: uncharacterized protein LOC108265387 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925518.2 True 2349 mRNA 0.41 9 21405762 21416293
XM_026925519.2 False 2308 mRNA 0.42 9 21405762 21416585

Neighbor

gene id symbol gene type direction distance location
LOC113533153 LOC108265759,LOC107570339,LOC107708259 coding downstream 72557 21315150 ~ 21333205 (-)
LOC113533345 LOC108265574,LOC108412055 coding downstream 213643 21190588 ~ 21192119 (-)
cfap74 cfap74 coding downstream 376818 20975284 ~ 21028944 (-)
cacna1db cacna1d coding downstream 503187 20785934 ~ 20902575 (-)
LOC113533248 NA coding downstream 638282 20757716 ~ 20767480 (-)
mmp23ba mmp23b,LOC106572002 coding upstream 41632 21458217 ~ 21474450 (-)
mbd4 NA coding upstream 428479 21845064 ~ 21857905 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 492157 21908742 ~ 22000262 (-)
tmcc1a tmcc1 coding upstream 593181 22009766 ~ 22055543 (-)
mrps25 mrps25 coding upstream 707066 22123651 ~ 22126863 (-)
G136567 NA non-coding downstream 55216 21350275 ~ 21350546 (-)
G136564 NA non-coding downstream 58483 21347077 ~ 21347279 (-)
LOC117597792 NA non-coding downstream 180257 21209196 ~ 21225505 (-)
G136212 NA non-coding downstream 449917 20955282 ~ 20955845 (-)
G136198 NA non-coding downstream 495739 20908068 ~ 20910023 (-)
G136612 NA non-coding upstream 151445 21568030 ~ 21616069 (-)
G136754 NA non-coding upstream 323200 21739785 ~ 21744730 (-)
G136760 NA non-coding upstream 349114 21765699 ~ 21767204 (-)
G136785 NA non-coding upstream 380660 21797245 ~ 21797907 (-)
G136799 NA non-coding upstream 408367 21824952 ~ 21825500 (-)
G136569 NA other downstream 43918 21356728 ~ 21361844 (-)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC100703896,LOC104919476,LOC103044197 other downstream 440270 20937119 ~ 20965492 (-)
LOC117597783 NA other downstream 1131786 20271589 ~ 20273976 (-)
trnat-cgu_2 NA other downstream 1364811 20040880 ~ 20040951 (-)
G135737 NA other downstream 1365074 20040297 ~ 20040688 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 994666 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 1535355 22951940 ~ 22959698 (-)
iqsec2b iqsec2,LOC108265842,LOC107747221,LOC107702804,LOC107683900,LOC107550910,LOC107725888 other upstream 2330885 23747470 ~ 23801583 (-)
rab7b rab7a,zgc:100918,LOC103037223,LOC108426684,LOC107588983,LOC105902761,LOC107689338,LOC105890731,LOC107602073 other upstream 4255933 25672518 ~ 25682956 (-)
aak1a LOC108265343 other upstream 4617062 26033647 ~ 26076884 (-)

Expression


Co-expression Network