mbd4


Basic Information

Item Value
gene id mbd4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21845064 ~ 21857905 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925608.2
CTGTTTTGATGAAAGCAGACGGTAAAAGAAGAAGAGctcgaggggaaaaaaaagggaaaaaaagcgGATATATGCTTGAATAAAGCTTCTTGGGTTTAGTTTAGACTCTCTGGACTCCTAACAACTTCATATGCTTAGGAGTAAAGATGATTCCTGACAAATGTGCTGACCAAACGATGGCTGCCAGTACAGAGCAGATGGACACATCGCTCCCTCCTGGATGGACAAGAGAGACAAGACAACGAAAGCAGGGAAAGACAGCAGGCAGAGTGGACACTTACATTATCAGTCCTGAGGGTAAACGCTTCAGATCCAGGGCAGAACTCCAGAAGTACTTGCTCTCTGAGGAAAGTGTTCATCTGGAACTGGATGCTTTTGACTTCACACCAAAAATCAAAGCACAGTCTCAGAAATCCAACTCTGAAAGGCCCCAACgaaaagaacaaaaagcagggaggagaaaagcaaaacagacaAATCAAACGACAGAAAGTCATCCTGGGGTAGCTGTGGGAGAAACGCAAAATGGAGggatacagatagagatagagacagagacagagacagaagtggaggagaagaagaacaacacagAAGCCCAGATGCAGGAAATAAACAGTAaggaagaagaacaaaaagacATCATGGACGAAACAGAGGAAGCATCCAGCAGTGTGAGAGAAAACACGTTGCCGGCTGTGCCTCTCATAAGCGTCCAGGCTACATCAGACAGCGAAGGAGAGGATAAAgcggaggtggaggaggaggcggaggagaaagaagaaagcgATGAAGTGAGTGACAGCCAGAAAAGCTCAcctgtcagaaacacacaaaatgGGACAAACTTACTTTCGGAGAAGCGGAGAACCAGTCCatactttaaaagaaagaacGACAGTCTCAGTCCTCCAAAGCGTAAAGCGTTCAGGAAGTGGACTCCTCCACGTTCCCCCTTCAAACTGGTACAAGAAACCTTGTTTCATGACCCGTGGAAGCTTCTGGTGGCCACCATCTTCCTCAACAGAACTACCGggaaATTGGCGATACCTATGCTGTGGCAGTTTTTTGAGCGTTACCCATCTGCTGAGGTAACACGTAACAGTGACTGGAAGCCACTCGCTGATCTTATGCAGCCGCTCGGTCTCAACGCCCTACGAGCCAAAACAATCATCCGCTTCTCTGATGAGTACCTCACCAAGTCATGGCGGTATCCCAGTGAGCTCTATGGCATCGGCAAATATGGCAACGATTCCTATCGCATATTCTGTGTGGGAGAATGGAGagagGTCACCCCAAACGATCACAAACTGAACAAGTATCACGCGTGGCTGTGGGAGAACCACAAGCAATTAGGCATCTGATGTTTTGGAGCCTCACAGCACTGTCTTCCTAACTTTTTTAACTTGCCATAATTTTAAATCAGGCCAAGGCATTAAAGCAAGGGCTGTATTTTTAGTAACTTCACCGAGGTCTACTGCTAAAGTTAAGCTGAGAATTAAAATTccttcaaaaaaatttttttcaaggtgaatcttttttttctacgCCAGTCCCAGAACAAGCTTGTCCTACTTGTTTTAATGTATGATTGTAAGGTTCCATGTTCTGCTTTTCAAACTTTTAACCTTGTGATATTTCACTTGGCCTTTTCAATATGCACATAAATGCAAGGCAGCTCTTCTTTTTCATGTGATAGTTTTAATTTTGGCCCGTTTCACACACTTTAGAAGAATAAAGAACAGGTTGAAACTGAACTTCTTGCAGATAACCTGACCTCGCTGGGCTCACAAACATGAGCTCAAAGCATGCTGGGGAAATTAGTGAACCTTTCCTTTAATATGGTccttataggaaaaaaaatatgtgtatagtacgtgtattgatgtgtgtacatttgaaggttttttatttatgtcatGTTTTCGATCCCATTGGGTTGAACAGTCATAATCAACTTGTTAtactatacattttttaaaatattcatgtaaTAAAGTGGCCAAAGTCTT
>XM_026925609.2
GTTTTGATGAAAGCAGACGGTAAAAGAAGAAGAGctcgaggggaaaaaaaagggaaaaaaagcgGATATATGCTTGAATAAAGCTTCTTGGGTTTAGTTTAGACTCTCTGGACTCCTAACAAGAGTAAAGATGATTCCTGACAAATGTGCTGACCAAACGATGGCTGCCAGTACAGAGCAGATGGACACATCGCTCCCTCCTGGATGGACAAGAGAGACAAGACAACGAAAGCAGGGAAAGACAGCAGGCAGAGTGGACACTTACATTATCAGTCCTGAGGGTAAACGCTTCAGATCCAGGGCAGAACTCCAGAAGTACTTGCTCTCTGAGGAAAGTGTTCATCTGGAACTGGATGCTTTTGACTTCACACCAAAAATCAAAGCACAGTCTCAGAAATCCAACTCTGAAAGGCCCCAACgaaaagaacaaaaagcagggaggagaaaagcaaaacagacaAATCAAACGACAGAAAGTCATCCTGGGGTAGCTGTGGGAGAAACGCAAAATGGAGggatacagatagagatagagacagagacagagacagaagtggaggagaagaagaacaacacagAAGCCCAGATGCAGGAAATAAACAGTAaggaagaagaacaaaaagacATCATGGACGAAACAGAGGAAGCATCCAGCAGTGTGAGAGAAAACACGTTGCCGGCTGTGCCTCTCATAAGCGTCCAGGCTACATCAGACAGCGAAGGAGAGGATAAAgcggaggtggaggaggaggcggaggagaaagaagaaagcgATGAAGTGAGTGACAGCCAGAAAAGCTCAcctgtcagaaacacacaaaatgGGACAAACTTACTTTCGGAGAAGCGGAGAACCAGTCCatactttaaaagaaagaacGACAGTCTCAGTCCTCCAAAGCGTAAAGCGTTCAGGAAGTGGACTCCTCCACGTTCCCCCTTCAAACTGGTACAAGAAACCTTGTTTCATGACCCGTGGAAGCTTCTGGTGGCCACCATCTTCCTCAACAGAACTACCGggaaATTGGCGATACCTATGCTGTGGCAGTTTTTTGAGCGTTACCCATCTGCTGAGGTAACACGTAACAGTGACTGGAAGCCACTCGCTGATCTTATGCAGCCGCTCGGTCTCAACGCCCTACGAGCCAAAACAATCATCCGCTTCTCTGATGAGTACCTCACCAAGTCATGGCGGTATCCCAGTGAGCTCTATGGCATCGGCAAATATGGCAACGATTCCTATCGCATATTCTGTGTGGGAGAATGGAGagagGTCACCCCAAACGATCACAAACTGAACAAGTATCACGCGTGGCTGTGGGAGAACCACAAGCAATTAGGCATCTGATGTTTTGGAGCCTCACAGCACTGTCTTCCTAACTTTTTTAACTTGCCATAATTTTAAATCAGGCCAAGGCATTAAAGCAAGGGCTGTATTTTTAGTAACTTCACCGAGGTCTACTGCTAAAGTTAAGCTGAGAATTAAAATTccttcaaaaaaatttttttcaaggtgaatcttttttttctacgCCAGTCCCAGAACAAGCTTGTCCTACTTGTTTTAATGTATGATTGTAAGGTTCCATGTTCTGCTTTTCAAACTTTTAACCTTGTGATATTTCACTTGGCCTTTTCAATATGCACATAAATGCAAGGCAGCTCTTCTTTTTCATGTGATAGTTTTAATTTTGGCCCGTTTCACACACTTTAGAAGAATAAAGAACAGGTTGAAACTGAACTTCTTGCAGATAACCTGACCTCGCTGGGCTCACAAACATGAGCTCAAAGCATGCTGGGGAAATTAGTGAACCTTTCCTTTAATATGGTccttataggaaaaaaaatatgtgtatagtacgtgtattgatgtgtgtacatttgaaggttttttatttatgtcatGTTTTCGATCCCATTGGGTTGAACAGTCATAATCAACTTGTTAtactatacattttttaaaatattcatgtaaTAAAGTGGCCAAAGTCTT

Function

NR:

description
PREDICTED: methyl-CpG-binding domain protein 4 isoform X2

GO: NA

KEGG:

id description
K10801 MBD4; methyl-CpG-binding domain protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925608.2 True 2012 mRNA 0.43 8 21845064 21857905
XM_026925609.2 False 1996 mRNA 0.43 8 21845064 21857903

Neighbor

gene id symbol gene type direction distance location
mmp23ba mmp23b,LOC106572002 coding downstream 370614 21458217 ~ 21474450 (-)
LOC113533387 LOC108265387 coding downstream 428479 21405762 ~ 21416585 (-)
LOC113533153 LOC108265759,LOC107570339,LOC107708259 coding downstream 511859 21315150 ~ 21333205 (-)
LOC113533345 LOC108265574,LOC108412055 coding downstream 652945 21190588 ~ 21192119 (-)
cfap74 cfap74 coding downstream 816120 20975284 ~ 21028944 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 50837 21908742 ~ 22000262 (-)
tmcc1a tmcc1 coding upstream 151861 22009766 ~ 22055543 (-)
mrps25 mrps25 coding upstream 265746 22123651 ~ 22126863 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 coding upstream 271013 22128918 ~ 22143669 (-)
wdr46 wdr46 coding upstream 293978 22151883 ~ 22160885 (-)
G136814 NA non-coding downstream 3525 21840950 ~ 21841539 (-)
G136811 NA non-coding downstream 5579 21839282 ~ 21839485 (-)
G136809 NA non-coding downstream 7396 21837072 ~ 21837668 (-)
G136802 NA non-coding downstream 16936 21827781 ~ 21828128 (-)
G136800 NA non-coding downstream 18726 21825721 ~ 21826338 (-)
G136928 NA non-coding upstream 147408 22005313 ~ 22005527 (-)
G137098 NA non-coding upstream 305209 22163114 ~ 22163323 (-)
LOC117597851 NA non-coding upstream 309950 22167855 ~ 22173520 (-)
G137137 qars non-coding upstream 402145 22260050 ~ 22260820 (-)
G137169 NA non-coding upstream 525476 22383381 ~ 22464146 (-)
G136569 NA other downstream 483220 21356728 ~ 21361844 (-)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC100703896,LOC104919476,LOC103044197 other downstream 879572 20937119 ~ 20965492 (-)
LOC117597783 NA other downstream 1571088 20271589 ~ 20273976 (-)
trnat-cgu_2 NA other downstream 1804113 20040880 ~ 20040951 (-)
G135737 NA other downstream 1804376 20040297 ~ 20040688 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 553346 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 1094035 22951940 ~ 22959698 (-)
iqsec2b iqsec2,LOC108265842,LOC107747221,LOC107702804,LOC107683900,LOC107550910,LOC107725888 other upstream 1889565 23747470 ~ 23801583 (-)
rab7b rab7a,zgc:100918,LOC103037223,LOC108426684,LOC107588983,LOC105902761,LOC107689338,LOC105890731,LOC107602073 other upstream 3814613 25672518 ~ 25682956 (-)
aak1a LOC108265343 other upstream 4175742 26033647 ~ 26076884 (-)

Expression


Co-expression Network