G136814


Basic Information

Item Value
gene id G136814
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21840950 ~ 21841539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU161568
gaatgagtaggtgtacaggtattcctattaagTGGCTGTTGAGTGTACATACAGCCTTCATAGACACCATTACCCCAATTCTATATACCAGAATGTAATCATATTATATTTCCATATTGTAAACCATAATTCTGGAactgaaaagtgtttttttttttttttttaaaaaacactcacAAGGTGGCAGGTTCTCCACACAGATGCTGTCTCTGCGTATGAAGCCCTCTGCGCACTCACATCGGAACGAACCCTGTTCATTAATACAAGCTTCATTCAGTCCCGGACACGCTATTGCTTTCTCCTTACACTCAtccacatctaaaaaaaaaaaaaagagaggcagacaCATGGGATATCTCAGACTTCTAAAGCGTCTGGGACTACAGTTTGACCTAAAAGACATAGCCTAAaggactaataataatatttgcaataattagagctttaaaagaaaaaaaaagtgctgaaaagATCAAATTAACAGTGGAACTAGGAGACTTACCGAGACACTTAGCTCCGGTCAGTCTGTAACCTCGAGCGCATTTCTTACAGCGAGCAGGACCACTGCCCATGCATCCTACACACGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161568 True 590 lncRNA 0.40 1 21840950 21841539

Neighbor

gene id symbol gene type direction distance location
mmp23ba mmp23b,LOC106572002 coding downstream 366500 21458217 ~ 21474450 (-)
LOC113533387 LOC108265387 coding downstream 424365 21405762 ~ 21416585 (-)
LOC113533153 LOC108265759,LOC107570339,LOC107708259 coding downstream 507745 21315150 ~ 21333205 (-)
LOC113533345 LOC108265574,LOC108412055 coding downstream 648831 21190588 ~ 21192119 (-)
cfap74 cfap74 coding downstream 812006 20975284 ~ 21028944 (-)
mbd4 NA coding upstream 3525 21845064 ~ 21857905 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 67203 21908742 ~ 22000262 (-)
tmcc1a tmcc1 coding upstream 168227 22009766 ~ 22055543 (-)
mrps25 mrps25 coding upstream 282112 22123651 ~ 22126863 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 coding upstream 287379 22128918 ~ 22143669 (-)
G136811 NA non-coding downstream 1465 21839282 ~ 21839485 (-)
G136809 NA non-coding downstream 3282 21837072 ~ 21837668 (-)
G136802 NA non-coding downstream 12822 21827781 ~ 21828128 (-)
G136800 NA non-coding downstream 14612 21825721 ~ 21826338 (-)
G136799 NA non-coding downstream 15450 21824952 ~ 21825500 (-)
G136928 NA non-coding upstream 163774 22005313 ~ 22005527 (-)
G137098 NA non-coding upstream 321575 22163114 ~ 22163323 (-)
LOC117597851 NA non-coding upstream 326316 22167855 ~ 22173520 (-)
G137137 qars non-coding upstream 418511 22260050 ~ 22260820 (-)
G137169 NA non-coding upstream 541842 22383381 ~ 22464146 (-)
G136569 NA other downstream 479106 21356728 ~ 21361844 (-)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC100703896,LOC104919476,LOC103044197 other downstream 875458 20937119 ~ 20965492 (-)
LOC117597783 NA other downstream 1566974 20271589 ~ 20273976 (-)
trnat-cgu_2 NA other downstream 1799999 20040880 ~ 20040951 (-)
G135737 NA other downstream 1800262 20040297 ~ 20040688 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 569712 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 1110401 22951940 ~ 22959698 (-)
iqsec2b iqsec2,LOC108265842,LOC107747221,LOC107702804,LOC107683900,LOC107550910,LOC107725888 other upstream 1905931 23747470 ~ 23801583 (-)
rab7b rab7a,zgc:100918,LOC103037223,LOC108426684,LOC107588983,LOC105902761,LOC107689338,LOC105890731,LOC107602073 other upstream 3830979 25672518 ~ 25682956 (-)
aak1a LOC108265343 other upstream 4192108 26033647 ~ 26076884 (-)

Expression


Co-expression Network