G136799


Basic Information

Item Value
gene id G136799
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21824952 ~ 21825500 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU161552
tttcattttacttatttatttatttttaaggtaaACAGAAGGCACTTCGGattaacatggaaaaaaaaaaacatttgacaaCACACAAATGAGCAACACTCTTTACTTTACAGACTGGTTTACTATTTACAAAGTGAAACAAGGacagcatacaaaaaaaaaaaaaaaaaatcttttcttctCTGTCGTACCTAGATGTTAATGAGACATTTGAGTATCACAGCTGGCTGTTGTATTTTAGCGTAAATTAAAGATTCCAGATTATATTCTGGTAGTGTTTTATCTAAGGTTTATAGTACAAATGAACAATTCACCATCAGCTTCAAAACAGTGTGAACATTTAACCCTCATGCTCTGTTCACTGCTTAGCAACTGATGTCCCACTGACCCAGAATACCTGTTTGATTTTATAGTAATATTaactgcaattttattttatttaaagtagtTATTGTTAAATCTATTTTATGAatactttacatacagtatacacggtgtcccaaaagtctccataatGAGGGAGAAAATAACACTTTTCATactaaaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161552 True 549 lncRNA 0.30 1 21824952 21825500

Neighbor

gene id symbol gene type direction distance location
mmp23ba mmp23b,LOC106572002 coding downstream 350502 21458217 ~ 21474450 (-)
LOC113533387 LOC108265387 coding downstream 408367 21405762 ~ 21416585 (-)
LOC113533153 LOC108265759,LOC107570339,LOC107708259 coding downstream 491747 21315150 ~ 21333205 (-)
LOC113533345 LOC108265574,LOC108412055 coding downstream 632833 21190588 ~ 21192119 (-)
cfap74 cfap74 coding downstream 796008 20975284 ~ 21028944 (-)
mbd4 NA coding upstream 19564 21845064 ~ 21857905 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 83242 21908742 ~ 22000262 (-)
tmcc1a tmcc1 coding upstream 184266 22009766 ~ 22055543 (-)
mrps25 mrps25 coding upstream 298151 22123651 ~ 22126863 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 coding upstream 303418 22128918 ~ 22143669 (-)
G136785 NA non-coding downstream 27045 21797245 ~ 21797907 (-)
G136760 NA non-coding downstream 57748 21765699 ~ 21767204 (-)
G136754 NA non-coding downstream 80222 21739785 ~ 21744730 (-)
G136612 NA non-coding downstream 208883 21568030 ~ 21616069 (-)
G136570 NA non-coding downstream 416742 21354298 ~ 21408210 (-)
G136800 NA non-coding upstream 221 21825721 ~ 21826338 (-)
G136802 NA non-coding upstream 2281 21827781 ~ 21828128 (-)
G136809 NA non-coding upstream 11572 21837072 ~ 21837668 (-)
G136811 NA non-coding upstream 13782 21839282 ~ 21839485 (-)
G136814 NA non-coding upstream 15450 21840950 ~ 21841539 (-)
G136569 NA other downstream 463108 21356728 ~ 21361844 (-)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC100703896,LOC104919476,LOC103044197 other downstream 859460 20937119 ~ 20965492 (-)
LOC117597783 NA other downstream 1550976 20271589 ~ 20273976 (-)
trnat-cgu_2 NA other downstream 1784001 20040880 ~ 20040951 (-)
G135737 NA other downstream 1784264 20040297 ~ 20040688 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 585751 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 1126440 22951940 ~ 22959698 (-)
iqsec2b iqsec2,LOC108265842,LOC107747221,LOC107702804,LOC107683900,LOC107550910,LOC107725888 other upstream 1921970 23747470 ~ 23801583 (-)
rab7b rab7a,zgc:100918,LOC103037223,LOC108426684,LOC107588983,LOC105902761,LOC107689338,LOC105890731,LOC107602073 other upstream 3847018 25672518 ~ 25682956 (-)
aak1a LOC108265343 other upstream 4208147 26033647 ~ 26076884 (-)

Expression


Co-expression Network