G136754


Basic Information

Item Value
gene id G136754
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21739785 ~ 21744730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU161501
cgcggcaaaaaaaaaattgcactgtTTGCAATTGATGCCCGTGCAACCACCATGCACAGAGGTTACATTGCAAGTGCATAATGGTTACATTAAATATATGCTCTCCAACCTAATAATACTCCCAGTAGATGCAGGTATGAACGGAACAACACTCACTACTCCAGGCGCTTGTCACCGAGCACAGCGCGAGCTCCAGTCGCCACTTCCGACCAAGGATAATCACAAAGAAATGTACATTCAGGTCGCTTCCGTGTGTATCTGTGAATCTGGTCAAAGGTGGTTGAAataactgttattttaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaacaatgcaaaataactATACATACATTAATTACAAGCAATCTGTATAATTCACAGCTTGACAGAACCACAGCTCACAACCTCTTCAAATGCAGGGTAAAAAAAATGTGGCTCGATTTTTGAAAGGTGTAGCGGAGAGCCTAAACATGCTGGTCCAAGTGACGAACATGAAATTACAAAAGGGGGCAAGTGCAAAAGTTCCAGTGTAGCAAAGATTCTAGGCCATCCCAATCAAAATTTGATGttctcttttaaaatatttggaaaaaaaaaacaagataattcTGACTACTAAGTGTGACAAATGGATGTATTTGTGTGATTTAATTCCTCATACCCCAGCATTATGTTAAAGTGGCATCACAGTATCAAGATTGCAGGCTTGGAGTAGGGTTGGATTGTATACCTTTGGGTAGTTTGCTGGATTTTTCGACTATTGGTGTATTGCTGTTTAAAcgcagtgtaaaaaaaaaaaaagggtggatTCCATCTAGGAAGTGTGTAGGGCCAAAACTAATCATGCTGGTCTAAAGAGCAAATCAGATTAAGGAAGAGGGAAGTGCAAGAACAGGAGGGTGCCCAGGATGCTAGGCCTAATCCCTCGAAAATGAGGACCCCTTACTGAAAATTAACATTTGCTAAACAAGAATACCCAGACACACAACTTAAGCGATTTAATGTCTAATACTCAGGTATCATTCTCATCCAGTAGCAGAatatatagttttgttttttgtcgATTTTGATTGGGGCTGGATTTTCTACCTTGGGTGGTTGGTACAGTCAGTGTTGCTCACCTTAGTTTTTCATATACTGGACCACCTGTGTCATTCTAGCAGCattaaggaaaaagaaaaaaaaaaagaggctaaaATCTATTATATTAACAAGTGTAAACTAAATATTGCACCACCCTCTTACCTCAAAATATACACTACAACCAATTCATACACCAATAAAAGACCCCACAATGGGGAAAAACGAAAATGCAGCTTAACTAAACTCACTCTAATTAGTGTATGGCTCGCTACGGAGTTCTGTGGCATGCTAAAGTCACCACAGGTCCTCCTCTTTCACCTGGTTAGTGCATAAGGCTCATGACAAGGCTACCCTCACCCACTTCCTTTTCTTGGGATTTAGAGTTGAATTGCACTTAAGTATGTGAAGCCAAACTGCCCGTCCCTTCTTACATGTTCACTGCTACTTTGAGTAGTGCGTTCCTCAGTGAACACAGCTTTTCAATCCCCGACCCCCACCTTTACAAACAAAGCTAAACCTGGACTGAATTTTGTAAACTTTACAGTGACCATGCGAAAAGTTTACTTGCCGTCCTATGGACAACGTTCCCAAGCACTGCATCACATGAAACTTTGCAGTAACAGGGCCTTGCCCAATATTAAGAAATCAAAGACATGCAAGTGGCCAGTGTTTGAGGTCACAGTTGTAGATTAAAGATCTTCTGTTAGTACTTAAACTGTGCTTGTAATGAGGGGATCGTAACACCAAAAGAGCTTTGCAGACAATTTCTGGTGACCATGAGTCTTGTCTGGTGCTTTGTCTGAATAGCCTTAAAActgtaaacaataaatacattttttttgggAGGGTGGTGAAAATAGGTATTGCAATAAACACGTAATAGTTTTCTAGTGACCCAAAAGGATGCACCATCTTGACTGAAGGCTGACGTGCAGATTTTCATGGGGAAATTGTTAAACTCTCAAGGCACTACATTCCCCttgatgctttttctttttccgtATCTTCAGTGTGGTCTGAGACAGCACTCACTGCATTTCATCAGCCAACAGTGAAAAAGTAGAACTGTAACTACCAGAGTTGTAGATTTGTCGTTTCAAGAATGGATTTCCTATTGCAAATAGATGCGTAATCAAATTTAATACTATTTCTGATTTGTTCTTTGAAGTTTGTGTCATATTTCCTTTGTTGTTTGTGCATGTACACTCTGGCAGCCATTGGCAAAGGCGGTTCTGTCTGTCTTAGCCTTAGCAAACAGTGATTGCTGAGTTGTCGTGAAAAAGACTGACAGATAGAGACCATAAAATTATCACTCACTATGGCTGTAGAATTCATAAAGGCCAGACAAATGCAGACTTACTTGCACTTgttcaagcacacacacacatacacgcgcacATACACACTATTTACAAGCTCTGAGGCTATGTACAGATGTGTCTGCAGTCAAATGCATACTGTTGCTGACATCAATAACACTGGACCAATGCAACAGGACTATGGGTACTGTAGTTTCAGTGTGAGGCCTGGGTAATCTGCACATCATAGCATGTCTATGACAGACACTGATCATTTACCAGCCAACAGAACCAGCTAAGTAGGTAGTTACTGATATAACCATGGAGTCATTG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein zyg-11 homolog, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161501 True 2718 lncRNA 0.40 2 21739785 21744730

Neighbor

gene id symbol gene type direction distance location
mmp23ba mmp23b,LOC106572002 coding downstream 265335 21458217 ~ 21474450 (-)
LOC113533387 LOC108265387 coding downstream 323200 21405762 ~ 21416585 (-)
LOC113533153 LOC108265759,LOC107570339,LOC107708259 coding downstream 406580 21315150 ~ 21333205 (-)
LOC113533345 LOC108265574,LOC108412055 coding downstream 547666 21190588 ~ 21192119 (-)
cfap74 cfap74 coding downstream 710841 20975284 ~ 21028944 (-)
mbd4 NA coding upstream 100334 21845064 ~ 21857905 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 164012 21908742 ~ 22000262 (-)
tmcc1a tmcc1 coding upstream 265036 22009766 ~ 22055543 (-)
mrps25 mrps25 coding upstream 378921 22123651 ~ 22126863 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 coding upstream 384188 22128918 ~ 22143669 (-)
G136612 NA non-coding downstream 123716 21568030 ~ 21616069 (-)
G136570 NA non-coding downstream 331575 21354298 ~ 21408210 (-)
G136567 NA non-coding downstream 389239 21350275 ~ 21350546 (-)
G136564 NA non-coding downstream 392506 21347077 ~ 21347279 (-)
LOC117597792 NA non-coding downstream 514280 21209196 ~ 21225505 (-)
G136760 NA non-coding upstream 20969 21765699 ~ 21767204 (-)
G136785 NA non-coding upstream 52515 21797245 ~ 21797907 (-)
G136799 NA non-coding upstream 80222 21824952 ~ 21825500 (-)
G136800 NA non-coding upstream 80991 21825721 ~ 21826338 (-)
G136802 NA non-coding upstream 83051 21827781 ~ 21828128 (-)
G136569 NA other downstream 377941 21356728 ~ 21361844 (-)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC100703896,LOC104919476,LOC103044197 other downstream 774293 20937119 ~ 20965492 (-)
LOC117597783 NA other downstream 1465809 20271589 ~ 20273976 (-)
trnat-cgu_2 NA other downstream 1698834 20040880 ~ 20040951 (-)
G135737 NA other downstream 1699097 20040297 ~ 20040688 (-)
arhgef16 ybx1,arhgef16,LOC106572208 other upstream 666521 22411251 ~ 22448721 (-)
kiaa2013 kiaa2013,LOC107595762,LOC107602448,LOC107735586 other upstream 1207210 22951940 ~ 22959698 (-)
iqsec2b iqsec2,LOC108265842,LOC107747221,LOC107702804,LOC107683900,LOC107550910,LOC107725888 other upstream 2002740 23747470 ~ 23801583 (-)
rab7b rab7a,zgc:100918,LOC103037223,LOC108426684,LOC107588983,LOC105902761,LOC107689338,LOC105890731,LOC107602073 other upstream 3927788 25672518 ~ 25682956 (-)
aak1a LOC108265343 other upstream 4288917 26033647 ~ 26076884 (-)

Expression


Co-expression Network